Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQN71_RS02480 Genome accession   NZ_LS483471
Coordinates   479265..481241 (+) Length   658 a.a.
NCBI ID   WP_015605272.1    Uniprot ID   A0A512AC25
Organism   Streptococcus cristatus strain NCTC13807     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 474265..486241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS02455 (NCTC13807_00475) - 474596..475747 (+) 1152 WP_015605276.1 MFS transporter -
  DQN71_RS02460 (NCTC13807_00476) - 475757..476485 (+) 729 WP_015605275.1 pseudouridine synthase -
  DQN71_RS02465 (NCTC13807_00477) - 476600..477094 (+) 495 WP_015605274.1 DUF536 domain-containing protein -
  DQN71_RS02475 (NCTC13807_00478) - 477369..479123 (+) 1755 WP_015605273.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  DQN71_RS02480 (NCTC13807_00479) amiA3 479265..481241 (+) 1977 WP_015605272.1 peptide ABC transporter substrate-binding protein Regulator
  DQN71_RS02485 (NCTC13807_00480) amiC 481307..482803 (+) 1497 WP_015605271.1 ABC transporter permease Regulator
  DQN71_RS02490 (NCTC13807_00481) amiD 482803..483729 (+) 927 WP_015605270.1 oligopeptide ABC transporter permease OppC Regulator
  DQN71_RS02495 (NCTC13807_00482) amiE 483738..484805 (+) 1068 WP_015605269.1 ABC transporter ATP-binding protein Regulator
  DQN71_RS02500 (NCTC13807_00483) amiF 484816..485742 (+) 927 WP_015605268.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72624.68 Da        Isoelectric Point: 4.7459

>NTDB_id=1142298 DQN71_RS02480 WP_015605272.1 479265..481241(+) (amiA3) [Streptococcus cristatus strain NCTC13807]
MKKSKVLALAGVSLLSVGVLAACSSSSKGKSEATSYNYVYSADPETLDYVTSGKASTADFVTNGVDGLLENDQYGNFVPS
MAESWTVSKDGLTYTYKIRKDAKWYTSEGEEYGDVTAQDFVTGLKHAADKKSQALYLVQQSVKGLDDYVNGKITDFSTVG
VKAVDDHTLQYTLNQPEPQWNSKTTSQVLWPINAEFLKKQGDKFGQSTDPTSILYNGPFLMKSITAKSAVEYQKNENYWD
KENVHIDTIKLAYFDGQDQDALARNFKDEAYTVARLYPTSSNYAGIEKDFKDNIFFTPPSAGVAVMGVNIDRQSYNHTSK
TTDAQKSSTKKAILNKDFRQALNFAIDRTSYSAQINGEEGAPYAVRNTYVPPSFVQVGEKSFGDVVEEKVAALGEEWKGV
QLEDGQDGLFNAEKAKAEFAKAKAALQAEGVEFPIHLDLPVAQTSKPMVNRAQSLKQSVEKTLGAENVVVDIQQMSEDDL
YNITYYAPNAAAEDWDISTAVGWNPDYQDPSTYLDILKTTSTETTKTYLGFEGADNAAAKQVGLDEFDRLVNEAGKETSD
VVTRYEKYAAAQAWLTDNSLVVPLMANPGAAPFISRIEPFSGAYAQTGNKTSSTYFKRLKVTNDVVTKKDYEAARKKWLK
EKEESNAKAQKDLESHVE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1142298 DQN71_RS02480 WP_015605272.1 479265..481241(+) (amiA3) [Streptococcus cristatus strain NCTC13807]
ATGAAAAAAAGCAAAGTATTGGCTTTGGCTGGAGTTAGTCTTCTTTCAGTAGGTGTTTTAGCTGCTTGTTCTAGCTCATC
AAAAGGCAAAAGCGAAGCAACATCTTACAACTATGTTTATAGTGCTGATCCAGAAACATTGGATTATGTAACATCTGGTA
AAGCTTCAACAGCTGATTTTGTGACAAATGGTGTAGATGGTTTGTTGGAAAATGACCAATATGGTAATTTTGTACCATCA
ATGGCAGAGTCTTGGACTGTCTCTAAAGACGGCTTGACTTACACCTACAAAATCCGTAAAGATGCCAAATGGTACACTTC
AGAAGGTGAAGAATATGGTGATGTGACTGCTCAGGACTTTGTAACTGGTCTTAAGCATGCAGCTGATAAAAAATCACAAG
CTCTTTACCTTGTGCAACAATCTGTGAAAGGTTTGGATGACTATGTAAATGGTAAAATAACCGATTTCTCTACTGTTGGA
GTTAAAGCAGTTGACGACCATACTCTTCAATACACTCTTAACCAACCTGAGCCACAGTGGAATTCAAAAACAACTTCACA
AGTCCTGTGGCCAATCAATGCAGAATTCCTTAAGAAACAAGGGGATAAATTCGGTCAATCTACTGATCCAACTTCTATCC
TTTACAATGGACCATTCTTGATGAAATCTATCACAGCTAAATCTGCTGTAGAGTACCAAAAGAATGAAAACTACTGGGAC
AAGGAAAATGTCCACATCGATACAATTAAGTTGGCTTACTTTGATGGACAAGACCAAGATGCTCTTGCTCGTAACTTCAA
AGATGAGGCTTATACGGTAGCTCGTCTCTACCCTACAAGCTCAAACTATGCTGGTATCGAAAAAGATTTCAAGGATAACA
TTTTCTTCACACCACCAAGTGCCGGTGTAGCCGTTATGGGTGTCAATATCGACCGCCAAAGCTACAATCATACAAGCAAA
ACAACAGATGCTCAAAAGTCTTCTACTAAGAAAGCCATTCTTAACAAAGACTTCCGTCAAGCCTTGAACTTTGCTATCGA
CCGTACATCATACTCAGCACAAATCAATGGTGAAGAGGGCGCTCCTTATGCTGTCCGCAACACTTATGTGCCACCTTCAT
TTGTTCAAGTCGGTGAAAAATCTTTCGGTGACGTTGTAGAAGAAAAAGTTGCAGCCTTGGGTGAAGAGTGGAAAGGTGTT
CAACTTGAGGACGGTCAAGATGGTCTCTTTAATGCTGAGAAAGCAAAAGCAGAGTTTGCAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGAGTAGAATTCCCAATCCATCTGGATCTTCCAGTTGCTCAGACTTCTAAGCCAATGGTTAACCGTGCGCAAT
CACTTAAGCAATCTGTTGAAAAGACTTTGGGAGCTGAGAATGTTGTTGTAGATATCCAACAAATGTCAGAAGATGATCTT
TACAACATTACTTACTATGCACCAAATGCCGCTGCTGAAGATTGGGATATCTCAACAGCTGTTGGTTGGAACCCTGACTA
TCAAGATCCATCAACTTATTTGGATATTTTGAAAACTACATCAACTGAAACTACAAAGACTTACCTTGGGTTTGAGGGAG
CAGACAATGCTGCCGCTAAGCAAGTTGGTTTAGATGAATTTGACCGCTTGGTAAATGAAGCTGGTAAGGAAACTTCAGAT
GTTGTTACTCGCTACGAAAAATATGCAGCAGCTCAGGCTTGGTTGACTGACAACTCTCTTGTTGTTCCATTGATGGCAAA
TCCTGGTGCAGCACCATTTATCTCACGTATCGAGCCATTCTCAGGTGCTTATGCCCAAACTGGTAATAAGACAAGTTCTA
CTTACTTCAAACGTCTTAAAGTTACAAATGACGTAGTAACGAAGAAAGACTACGAAGCAGCTCGTAAGAAATGGCTGAAA
GAAAAAGAAGAGTCAAATGCGAAAGCACAAAAAGATCTCGAAAGTCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512AC25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.313

100

0.664
  amiA3 Streptococcus thermophilus LMG 18311

65.857

100

0.66
  amiA Streptococcus salivarius strain HSISS4

65.046

100

0.65

Multiple sequence alignment