Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQN71_RS02500 Genome accession   NZ_LS483471
Coordinates   484816..485742 (+) Length   308 a.a.
NCBI ID   WP_015605268.1    Uniprot ID   A0A512AC41
Organism   Streptococcus cristatus strain NCTC13807     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 479816..490742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS02485 (NCTC13807_00480) amiC 481307..482803 (+) 1497 WP_015605271.1 ABC transporter permease Regulator
  DQN71_RS02490 (NCTC13807_00481) amiD 482803..483729 (+) 927 WP_015605270.1 oligopeptide ABC transporter permease OppC Regulator
  DQN71_RS02495 (NCTC13807_00482) amiE 483738..484805 (+) 1068 WP_015605269.1 ABC transporter ATP-binding protein Regulator
  DQN71_RS02500 (NCTC13807_00483) amiF 484816..485742 (+) 927 WP_015605268.1 ATP-binding cassette domain-containing protein Regulator
  DQN71_RS02505 (NCTC13807_00484) - 486002..488191 (+) 2190 WP_041826811.1 PTS transporter subunit IIBC -
  DQN71_RS02510 (NCTC13807_00485) - 488209..489024 (+) 816 WP_015605266.1 endonuclease/exonuclease/phosphatase family protein -
  DQN71_RS02515 (NCTC13807_00486) liaF 489247..489942 (+) 696 WP_015605265.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.89 Da        Isoelectric Point: 5.7081

>NTDB_id=1142302 DQN71_RS02500 WP_015605268.1 484816..485742(+) (amiF) [Streptococcus cristatus strain NCTC13807]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDILYEGKKINGKQSKA
DEAELIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEDRQEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDPEQHDYSVDQPSMIEIRPGHYVWANKAEADRYKKEYK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1142302 DQN71_RS02500 WP_015605268.1 484816..485742(+) (amiF) [Streptococcus cristatus strain NCTC13807]
ATGACTGAAAAATTAGTTGAGATTAAAGATTTAGAAATTTCCTTCGGCGAAGGAAGTAAGAAGTTTGTAGCTGTAAAAAA
TGCGAATTTCTTTATCAATAAAGGAGAAACTTTTTCCCTTGTAGGTGAGTCTGGTTCTGGTAAAACAACCATCGGCCGTG
CTATCATCGGCTTGAATGATACTAGTGCAGGTGACATCTTATACGAAGGCAAAAAAATCAACGGGAAGCAATCTAAAGCT
GATGAGGCTGAATTGATTCGGAAGATTCAGATGATTTTCCAAGACCCAGCAGCCAGCTTGAATGAGCGTGCTACGGTTGA
CTATATCATTTCAGAAGGTCTTTATAACTACCATCTTTTTGAAAATGAAGAAGATCGTCAGGAAAAAGTTAAGAATATCA
TTCGTGAAGTGGGTCTCTTGGCTGAGCATTTGACACGCTATCCTCACGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCTCGTGCCTTGGTAATGGAGCCAGATTTCGTCATTGCGGATGAGCCAATCTCTGCCTTGGACGTGTCTGTCCGGGC
GCAAGTCTTGAACCTTTTGAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTTATCGCCCACGACCTATCGGTAG
TTCGCTTTATTTCAGATCGAATTGCTGTTATCTACAAAGGTGTTATCGTTGAGGTTGCAGAGACAGAAGAGTTGTTTAAC
AACCCGATCCACCCTTATACGCAGTCGCTATTGTCTGCTGTGCCGATTCCAGACCCAATTCTGGAACGCAAAAAGGTCTT
AAAGGTTTACGATCCAGAGCAGCATGACTACTCAGTGGATCAACCTAGTATGATTGAGATTCGTCCAGGACACTATGTCT
GGGCTAATAAGGCAGAAGCGGACCGTTATAAAAAAGAATATAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512AC41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.641

99.351

0.841
  amiF Streptococcus thermophilus LMG 18311

83.987

99.351

0.834
  amiF Streptococcus thermophilus LMD-9

83.66

99.351

0.831

Multiple sequence alignment