Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQL01_RS06180 Genome accession   NZ_LS483451
Coordinates   1169739..1170548 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164739..1175548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS06160 - 1167133..1168119 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  DQL01_RS06165 - 1168391..1169103 (-) 713 Protein_1173 potassium channel family protein -
  DQL01_RS06170 - 1169150..1169404 (-) 255 WP_044788589.1 type II toxin-antitoxin system RelE family toxin -
  DQL01_RS06175 relB 1169406..1169648 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  DQL01_RS06180 vicX 1169739..1170548 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DQL01_RS06185 micB 1170550..1171899 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQL01_RS06190 micA 1171892..1172596 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DQL01_RS06195 mutY 1172651..1173826 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  DQL01_RS12650 - 1173923..1174045 (+) 123 WP_256090636.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=1142056 DQL01_RS06180 WP_001289493.1 1169739..1170548(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6836166]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1142056 DQL01_RS06180 WP_001289493.1 1169739..1170548(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGTGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment