Detailed information NTG0114196

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOKI154_RS07560
• Genome accession: NZ_CP006823
• Coordinates: 1563287..1564342 (-)
• Length: 351 a.a.
• NCBI ID: WP_025367114.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki154
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1558287..1569342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI154_RS07535 (HPOKI154_07825)	-	1558833..1560245 (-)	1413	WP_025367111.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI154_RS07540 (HPOKI154_07830)	comB10	1560315..1561451 (-)	1137	WP_025367112.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI154_RS07545 (HPOKI154_07835)	comB9	1561444..1562406 (-)	963	WP_025314238.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI154_RS07550 (HPOKI154_07840)	comB8	1562406..1563149 (-)	744	WP_025367113.1	type IV secretion system protein	Machinery gene
HPOKI154_RS07555 (HPOKI154_07845)	comB7	1563146..1563271 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPOKI154_RS07560 (HPOKI154_07850)	comB6	1563287..1564342 (-)	1056	WP_025367114.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI154_RS07565 (HPOKI154_07855)	-	1564350..1565345 (-)	996	WP_025367115.1	PDZ domain-containing protein	-
HPOKI154_RS07570 (HPOKI154_07860)	-	1565345..1565638 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI154_RS07575 (HPOKI154_07865)	panD	1565649..1565999 (-)	351	WP_025367116.1	aspartate 1-decarboxylase	-
HPOKI154_RS07580 (HPOKI154_07870)	-	1565989..1568211 (-)	2223	WP_025367117.1	AAA family ATPase	-
HPOKI154_RS07585 (HPOKI154_07875)	-	1568211..1568486 (-)	276	WP_025367118.1	ATP-dependent Clp protease adaptor ClpS	-
HPOKI154_RS07590 (HPOKI154_07880)	-	1568494..1568907 (-)	414	WP_001023018.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39941.94 Da
• Isoelectric Point: 8.8165

>NTDB_id=114196 HPOKI154_RS07560 WP_025367114.1 1563287..1564342(-) (comB6) [Helicobacter pylori oki154]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGFFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVLACLKKCFALGFYKPFLLLVGFLNVSVTKVLIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASTRESISKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=114196 HPOKI154_RS07560 WP_025367114.1 1563287..1564342(-) (comB6) [Helicobacter pylori oki154]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACACCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCCAGCACGCTTTTAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGTTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGAAGCGTTGTGCTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGTTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CAACTCCACCCGCTTCTTCTAGCGTTTCTGCTTCTACAAGAGAAAGCATCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963