Detailed information NTG0114193

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI154_RS07545
• Genome accession: NZ_CP006823
• Coordinates: 1561444..1562406 (-)
• Length: 320 a.a.
• NCBI ID: WP_025314238.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki154
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1556444..1567406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI154_RS07525 (HPOKI154_07815)	-	1556749..1557681 (-)	933	WP_025223374.1	GDP-L-fucose synthase family protein	-
HPOKI154_RS07530 (HPOKI154_07820)	gmd	1557674..1558819 (-)	1146	WP_025367110.1	GDP-mannose 4,6-dehydratase	-
HPOKI154_RS07535 (HPOKI154_07825)	-	1558833..1560245 (-)	1413	WP_025367111.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI154_RS07540 (HPOKI154_07830)	comB10	1560315..1561451 (-)	1137	WP_025367112.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI154_RS07545 (HPOKI154_07835)	comB9	1561444..1562406 (-)	963	WP_025314238.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI154_RS07550 (HPOKI154_07840)	comB8	1562406..1563149 (-)	744	WP_025367113.1	type IV secretion system protein	Machinery gene
HPOKI154_RS07555 (HPOKI154_07845)	comB7	1563146..1563271 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPOKI154_RS07560 (HPOKI154_07850)	comB6	1563287..1564342 (-)	1056	WP_025367114.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI154_RS07565 (HPOKI154_07855)	-	1564350..1565345 (-)	996	WP_025367115.1	PDZ domain-containing protein	-
HPOKI154_RS07570 (HPOKI154_07860)	-	1565345..1565638 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI154_RS07575 (HPOKI154_07865)	panD	1565649..1565999 (-)	351	WP_025367116.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36831.40 Da
• Isoelectric Point: 9.2072

>NTDB_id=114193 HPOKI154_RS07545 WP_025314238.1 1561444..1562406(-) (comB9) [Helicobacter pylori oki154]
MRKVLYALVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENAPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=114193 HPOKI154_RS07545 WP_025314238.1 1561444..1562406(-) (comB9) [Helicobacter pylori oki154]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACGAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTTGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944