Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   DQK99_RS04115 Genome accession   NZ_LS483448
Coordinates   758213..759547 (+) Length   444 a.a.
NCBI ID   WP_000491795.1    Uniprot ID   A0AAJ5P3Y0
Organism   Streptococcus pneumoniae strain 4041STDY6836167     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context


Location: 753213..764547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK99_RS04095 - 753487..754356 (+) 870 WP_001245819.1 putative PEP-binding protein -
  DQK99_RS04100 - 754331..754771 (+) 441 WP_001812925.1 ASCH domain-containing protein -
  DQK99_RS04105 - 754894..757440 (+) 2547 WP_001149111.1 M1 family metallopeptidase -
  DQK99_RS04110 ciaR 757549..758223 (+) 675 WP_000590640.1 two-component system response regulator CiaR Regulator
  DQK99_RS04115 ciaH 758213..759547 (+) 1335 WP_000491795.1 two-component system sensor histidine kinase CiaH Regulator
  DQK99_RS04120 - 759581..759868 (-) 288 WP_001145225.1 DUF3270 domain-containing protein -
  DQK99_RS04125 - 760008..760937 (+) 930 WP_000411847.1 peptidase U32 family protein -
  DQK99_RS04135 - 761137..763587 (+) 2451 WP_111703783.1 bifunctional DnaQ family exonuclease/ATP-dependent helicase -

Sequence


Protein


Download         Length: 444 a.a.        Molecular weight: 50672.40 Da        Isoelectric Point: 9.3547

>NTDB_id=1141817 DQK99_RS04115 WP_000491795.1 758213..759547(+) (ciaH) [Streptococcus pneumoniae strain 4041STDY6836167]
MFSKLKKTWYADDFSYFIRNFGVFTLIFSTMTLIILQVMHSSLYTSVDDKLHGLSENPQAVIQLAINRATEEIKDLENAR
ADASKVEIKPNVSSNTEVILFDKDFTQLLSGNRFLGLDKIKLEKKELGHIYQIQVFNSYGQEEIYRVILMETNISSVSTN
IKYAAVLINTSQLEQASQKHEQLIVVVMASFWILSLLASLYLARVSVRPLLESMQKQQSFVENASHELRTPLAVLQNRLE
TLFRKPEATIMDVSESIASSLEEVRNMRFLTTSLLNLARRDDGIKPELAEVPTSFFNTTFTNYEMIASENNRVFRFENRI
HRTIVTDQLLLKQLMTILFDNAVKYTEEDGEINFLISATDRNLYLLVSDNGIGISTEDKKKIFDRFYRVDKARTRQKGGF
GLGLSLAKQIVDALKGTVTVKDNKPKGTIFEVKIAIQTPSKKKK

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=1141817 DQK99_RS04115 WP_000491795.1 758213..759547(+) (ciaH) [Streptococcus pneumoniae strain 4041STDY6836167]
ATGTTCAGTAAACTTAAAAAAACATGGTATGCGGATGACTTTAGTTATTTTATCCGCAACTTCGGTGTCTTCACCCTGAT
TTTTTCTACAATGACTCTGATTATTTTACAAGTCATGCATTCGAGTCTTTATACTTCGGTGGACGATAAGCTTCATGGAC
TGAGTGAAAATCCTCAAGCAGTTATTCAGCTGGCTATAAATAGGGCAACAGAAGAGATTAAAGATTTAGAAAATGCTAGG
GCGGACGCTAGTAAAGTAGAAATAAAACCTAATGTCAGTTCCAATACGGAAGTCATTCTCTTTGATAAAGACTTTACTCA
ACTTCTTTCTGGAAATCGATTTTTGGGCTTGGATAAGATTAAGTTAGAAAAGAAAGAACTAGGACATATCTACCAGATTC
AGGTTTTTAATAGCTATGGGCAGGAAGAAATCTATCGTGTGATTTTGATGGAGACCAATATTAGTTCGGTTTCAACCAAT
ATCAAGTATGCTGCTGTCTTGATTAATACCAGTCAGTTGGAGCAGGCTAGTCAAAAGCATGAGCAATTGATTGTGGTCGT
GATGGCTAGTTTCTGGATTTTGTCTTTACTTGCCAGTCTCTATCTAGCTAGGGTCAGTGTTAGGCCCCTGCTTGAGAGTA
TGCAGAAGCAACAGTCTTTTGTGGAAAATGCCAGTCATGAGTTACGAACTCCACTCGCAGTTTTGCAAAATCGCTTAGAG
ACCCTTTTTCGTAAGCCAGAAGCTACCATTATGGATGTGAGCGAAAGCATTGCATCGAGTTTGGAAGAAGTCCGAAATAT
GCGTTTTTTAACGACAAGCTTGCTGAACTTAGCTCGGAGAGATGATGGGATTAAGCCGGAGCTTGCAGAAGTTCCAACTA
GCTTTTTTAATACAACTTTCACAAACTACGAGATGATTGCTTCGGAAAATAATCGTGTCTTCCGTTTTGAAAATCGTATC
CATCGAACAATTGTCACAGATCAGCTTCTTCTGAAACAACTGATGACCATTCTTTTCGATAATGCCGTCAAGTATACTGA
GGAGGATGGTGAAATTAATTTTCTTATCTCGGCGACCGATCGCAATCTTTATTTACTTGTTTCTGATAATGGAATCGGTA
TTTCGACAGAAGATAAAAAGAAAATTTTTGACCGTTTTTATCGAGTAGACAAAGCTAGAACCCGGCAAAAAGGTGGTTTT
GGTTTAGGATTATCCCTAGCCAAGCAAATTGTAGATGCTCTAAAAGGAACTGTTACTGTCAAAGATAATAAACCCAAGGG
AACAATCTTTGAAGTGAAGATTGCCATTCAGACACCATCTAAAAAGAAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

99.775

100

0.998

  ciaH Streptococcus pneumoniae D39

99.775

100

0.998

  ciaH Streptococcus pneumoniae R6

99.775

100

0.998

  ciaH Streptococcus pneumoniae TIGR4

99.775

100

0.998

  ciaH Streptococcus mutans UA159

55.632

97.973

0.545


Multiple sequence alignment