Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL20_RS01715 Genome accession   NZ_LS483444
Coordinates   292403..294385 (+) Length   660 a.a.
NCBI ID   WP_006595054.1    Uniprot ID   A0A3A5Q0M3
Organism   Streptococcus australis strain NCTC13166     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 287403..299385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS01695 (NCTC11371_00336) - 289320..289988 (+) 669 WP_006595058.1 fructose-6-phosphate aldolase -
  DQL20_RS01700 (NCTC11371_00337) - 290003..291094 (+) 1092 WP_006596970.1 glycerol dehydrogenase -
  DQL20_RS01705 (NCTC11371_00338) - 291306..291446 (+) 141 WP_006595056.1 bacteriocin -
  DQL20_RS01710 (NCTC11371_00339) - 291541..292215 (+) 675 WP_006595055.1 CPBP family intramembrane glutamic endopeptidase -
  DQL20_RS01715 (NCTC11371_00340) amiA3 292403..294385 (+) 1983 WP_006595054.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS01725 (NCTC11371_00341) leuS 294587..297088 (+) 2502 WP_006595053.1 leucine--tRNA ligase -
  DQL20_RS01730 (NCTC11371_00342) - 297132..297290 (-) 159 WP_006595052.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DQL20_RS01735 (NCTC11371_00343) - 297505..297693 (-) 189 WP_006595051.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DQL20_RS01740 (NCTC11371_00344) - 297861..298553 (+) 693 WP_006595050.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73580.29 Da        Isoelectric Point: 4.6831

>NTDB_id=1141720 DQL20_RS01715 WP_006595054.1 292403..294385(+) (amiA3) [Streptococcus australis strain NCTC13166]
MKKGKLLLATGALLLSVSALVACSQGGKSSSSDNQVFSYVYTQDPDTLDYSLSNKRSTSEFTGNAVDGLLEVDKYGNLIP
SLAKDWTVSKDGLTYTYKLRKGVKWVTAEGEEFGEVKAQDFVTGLQHAADKKSSALYLVQQSIKGLDDYVSGKTKDFSTV
GIKAVDDYTVQYTLNQPESFWNSKTTMGILMPVNKEFLDSKGDDYGQGTNPSSILYCGPYLIKAITSKSVVTLEKNPTYW
DADNVKISKVKLTYYDGQDSESLIRGFDNGDYTFARVFPNGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQAYEITT
KTTDAQKSSTKKAILNKDFRQAIMFAFNRKAYVAQANGEASADKVIRNTFTPPNFVQIDGKDFGESVEKNLEEYGDEWKG
VSVEDGKDTLYNPTKAKEEFAKAKEALQGQGVEFPIHLDLPVSSTYTEGVKQAQSFKQSIESTLGAENVVIDLNMVSEDD
LNRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYLDITNSKNGENANSYFGFDAGTNNAAAKEAGFDEYDQLIEDAHNET
KDVNDRYEKYAKAQAWLTDSALLIPIHSDGASPGVRKTVPYTAAFAWTGHKGQTFNYKYLELQDKVLTTKEYDEAREQWK
KEKEESNKKAQKELESHVED

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1141720 DQL20_RS01715 WP_006595054.1 292403..294385(+) (amiA3) [Streptococcus australis strain NCTC13166]
ATGAAAAAAGGGAAGCTACTCTTAGCCACCGGCGCTCTGCTTTTGTCTGTAAGCGCACTGGTAGCCTGCTCACAAGGAGG
GAAATCTTCAAGTTCGGACAACCAGGTCTTTAGTTATGTATATACGCAAGATCCGGATACTTTGGATTATTCACTCTCTA
ATAAACGGTCAACTTCAGAATTTACAGGTAATGCTGTGGATGGTTTGTTAGAAGTTGACAAATACGGCAACTTAATCCCA
TCTCTTGCTAAGGATTGGACTGTTTCAAAAGATGGTCTGACCTATACCTATAAACTTCGTAAAGGGGTTAAATGGGTGAC
CGCTGAAGGGGAAGAATTCGGAGAAGTTAAGGCCCAAGACTTTGTGACGGGGCTTCAGCACGCAGCGGACAAGAAATCTT
CGGCCCTCTATCTCGTCCAACAATCTATCAAAGGGTTGGATGATTATGTCTCAGGGAAAACCAAAGACTTCTCAACAGTT
GGTATCAAAGCTGTCGATGACTATACGGTTCAATACACCTTGAACCAACCAGAAAGTTTCTGGAATTCAAAAACCACCAT
GGGCATTTTGATGCCAGTCAATAAAGAATTCTTAGATTCTAAGGGAGATGACTACGGTCAAGGTACGAACCCTTCTAGTA
TTCTTTATTGTGGTCCTTATTTGATTAAAGCTATCACCTCTAAATCTGTTGTGACGCTTGAAAAGAACCCAACCTATTGG
GATGCTGATAATGTAAAAATTTCTAAGGTTAAGCTGACCTATTATGATGGACAAGATTCAGAATCTTTGATCCGTGGATT
TGATAACGGAGACTATACCTTTGCCCGTGTCTTCCCAAATGGCTCTAACTATAAGAGTGTAGAGAAGAAACACAAAGATG
ACATTGTCTTCAGTGACCAAGGATCCTCTACTTATAACTTGTCTTTCAACATTGACCGTCAAGCTTATGAGATTACGACT
AAAACTACAGATGCTCAAAAGAGCTCAACCAAGAAAGCAATCTTGAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTT
CAACCGCAAGGCCTATGTAGCGCAAGCCAATGGGGAAGCATCTGCAGACAAGGTCATCCGCAACACCTTCACTCCTCCAA
ACTTTGTTCAAATTGATGGCAAAGATTTCGGTGAGTCTGTAGAGAAAAACTTAGAAGAATATGGTGATGAATGGAAAGGT
GTTTCTGTCGAAGATGGAAAAGATACCCTTTACAATCCAACCAAGGCCAAGGAAGAGTTTGCCAAGGCCAAAGAAGCTCT
TCAAGGCCAAGGGGTAGAGTTCCCGATTCATTTGGACCTCCCTGTTTCATCCACCTATACAGAAGGAGTCAAGCAAGCTC
AATCCTTTAAACAGTCGATCGAATCTACCCTAGGAGCAGAAAATGTCGTCATCGACTTGAATATGGTATCTGAGGACGAT
CTTAATCGAGTGACCTACTTTGCTGAAAATGCTTCTCAACAAGACTGGGATTTGAACAACAACTTGGGTTGGGGTCCAGA
CTATACCGATCCATCTTCTTACCTAGATATCACAAACTCTAAGAATGGTGAAAATGCAAATTCTTACTTCGGATTTGATG
CTGGTACTAATAACGCAGCTGCTAAAGAAGCTGGTTTTGATGAATACGATCAATTGATTGAAGATGCACATAATGAAACA
AAAGATGTCAATGACCGCTATGAAAAATATGCTAAGGCTCAGGCTTGGTTGACTGATAGTGCCCTCTTAATCCCGATTCA
TTCAGATGGTGCCTCTCCAGGTGTTCGTAAGACAGTTCCATACACAGCTGCCTTTGCTTGGACAGGACACAAGGGTCAAA
CCTTCAACTACAAGTACTTGGAATTGCAAGACAAAGTTTTGACAACCAAGGAGTACGATGAAGCGCGTGAACAATGGAAG
AAAGAAAAAGAAGAATCCAATAAGAAAGCTCAAAAAGAACTAGAAAGTCACGTAGAAGACTAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A5Q0M3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.371

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

55.219

100

0.553
  amiA Streptococcus salivarius strain HSISS4

55.152

100

0.552

Multiple sequence alignment