Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DQN58_RS09760 | Genome accession | NZ_LS483443 |
| Coordinates | 2009626..2010078 (+) | Length | 150 a.a. |
| NCBI ID | WP_006719138.1 | Uniprot ID | E6KZA6 |
| Organism | Aggregatibacter segnis ATCC 33393 strain NCTC 10977 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2004626..2015078
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN58_RS09740 (NCTC10977_01951) | nanQ | 2006287..2006757 (+) | 471 | WP_006719132.1 | N-acetylneuraminate anomerase | - |
| DQN58_RS09745 (NCTC10977_01952) | - | 2006854..2007648 (-) | 795 | WP_006719133.1 | formate/nitrite transporter family protein | - |
| DQN58_RS09750 (NCTC10977_01953) | - | 2007812..2008357 (-) | 546 | WP_006719135.1 | carboxymuconolactone decarboxylase family protein | - |
| DQN58_RS09755 (NCTC10977_01954) | ampD | 2008945..2009499 (-) | 555 | WP_006719137.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DQN58_RS09760 (NCTC10977_01955) | pilA | 2009626..2010078 (+) | 453 | WP_006719138.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DQN58_RS09765 (NCTC10977_01956) | pilB | 2010107..2011516 (+) | 1410 | WP_006719140.1 | GspE/PulE family protein | Machinery gene |
| DQN58_RS09770 (NCTC10977_01957) | pilC | 2011509..2012732 (+) | 1224 | WP_006719142.1 | type II secretion system F family protein | Machinery gene |
| DQN58_RS09775 (NCTC10977_01958) | - | 2012729..2013421 (+) | 693 | WP_006719144.1 | A24 family peptidase | - |
| DQN58_RS09780 (NCTC10977_01959) | coaE | 2013471..2014094 (+) | 624 | WP_006719146.1 | dephospho-CoA kinase | - |
| DQN58_RS09785 (NCTC10977_01960) | yacG | 2014084..2014299 (+) | 216 | WP_006719148.1 | DNA gyrase inhibitor YacG | - |
| DQN58_RS09790 (NCTC10977_01961) | - | 2014296..2014568 (+) | 273 | WP_006719149.1 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15595.91 Da Isoelectric Point: 8.4701
>NTDB_id=1141704 DQN58_RS09760 WP_006719138.1 2009626..2010078(+) (pilA) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
MTIQSVFISLKSVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAISELLQASAPLRAEVELCIYNTGKTDNCSGGQ
NGIQADVTDATKQKYVKSTAVKSGAITVTGKSSLENISYTLSASGTAATGVSWTASCGNNAEIFPAGFCS
MTIQSVFISLKSVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAISELLQASAPLRAEVELCIYNTGKTDNCSGGQ
NGIQADVTDATKQKYVKSTAVKSGAITVTGKSSLENISYTLSASGTAATGVSWTASCGNNAEIFPAGFCS
Nucleotide
Download Length: 453 bp
>NTDB_id=1141704 DQN58_RS09760 WP_006719138.1 2009626..2010078(+) (pilA) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
ATGACAATTCAATCCGTTTTTATCTCTCTGAAATCCGTTAAAAAAGGGTTTACATTAATCGAATTGATGATTGTGATTGC
GATCGTCGCAATTCTCGCAACCGTCGCCGTGCCATCTTACCAAAATTACACGAAAAAAGCGGCTATTTCTGAGTTGTTAC
AGGCTTCTGCGCCGCTTCGTGCCGAAGTGGAACTGTGTATTTATAACACCGGCAAAACCGACAACTGCAGCGGAGGACAA
AATGGCATTCAAGCCGATGTTACCGATGCCACAAAACAAAAATACGTAAAATCCACGGCGGTAAAAAGTGGCGCTATCAC
TGTAACCGGGAAAAGCAGTCTCGAAAATATTAGCTACACCCTCAGCGCCTCCGGCACCGCTGCCACGGGGGTAAGCTGGA
CGGCTTCCTGCGGTAATAATGCAGAGATTTTCCCAGCTGGCTTTTGCTCTTAA
ATGACAATTCAATCCGTTTTTATCTCTCTGAAATCCGTTAAAAAAGGGTTTACATTAATCGAATTGATGATTGTGATTGC
GATCGTCGCAATTCTCGCAACCGTCGCCGTGCCATCTTACCAAAATTACACGAAAAAAGCGGCTATTTCTGAGTTGTTAC
AGGCTTCTGCGCCGCTTCGTGCCGAAGTGGAACTGTGTATTTATAACACCGGCAAAACCGACAACTGCAGCGGAGGACAA
AATGGCATTCAAGCCGATGTTACCGATGCCACAAAACAAAAATACGTAAAATCCACGGCGGTAAAAAGTGGCGCTATCAC
TGTAACCGGGAAAAGCAGTCTCGAAAATATTAGCTACACCCTCAGCGCCTCCGGCACCGCTGCCACGGGGGTAAGCTGGA
CGGCTTCCTGCGGTAATAATGCAGAGATTTTCCCAGCTGGCTTTTGCTCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
65 |
93.333 |
0.607 |
| pilA | Haemophilus influenzae Rd KW20 |
61.111 |
96 |
0.587 |
| pilA | Glaesserella parasuis strain SC1401 |
51.748 |
95.333 |
0.493 |