Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DQN58_RS09305 Genome accession   NZ_LS483443
Coordinates   1917119..1917862 (-) Length   247 a.a.
NCBI ID   WP_006718985.1    Uniprot ID   E6KYX8
Organism   Aggregatibacter segnis ATCC 33393 strain NCTC 10977     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1912119..1922862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN58_RS09285 (NCTC10977_01856) rimI 1912270..1912713 (+) 444 WP_006718977.1 ribosomal protein S18-alanine N-acetyltransferase -
  DQN58_RS09290 (NCTC10977_01857) recC 1912716..1916111 (-) 3396 WP_006718979.1 exodeoxyribonuclease V subunit gamma -
  DQN58_RS09295 (NCTC10977_01858) comQ 1916150..1916452 (-) 303 WP_006718982.1 DUF5374 domain-containing protein Machinery gene
  DQN58_RS09300 (NCTC10977_01859) - 1916427..1917122 (-) 696 WP_006718983.1 DUF2572 family protein -
  DQN58_RS09305 (NCTC10977_01860) comO 1917119..1917862 (-) 744 WP_006718985.1 type II secretion system protein J Machinery gene
  DQN58_RS09310 (NCTC10977_01861) comN 1917849..1918367 (-) 519 WP_006718987.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DQN58_RS09330 (NCTC10977_01866) pal 1919044..1919496 (-) 453 WP_006718991.1 peptidoglycan-associated lipoprotein Pal -
  DQN58_RS09335 (NCTC10977_01867) tolB 1919511..1920791 (-) 1281 WP_006718992.1 Tol-Pal system beta propeller repeat protein TolB -
  DQN58_RS09340 (NCTC10977_01868) tolA 1920825..1921940 (-) 1116 WP_006718994.1 cell envelope integrity protein TolA -
  DQN58_RS09345 (NCTC10977_01869) tolR 1921958..1922380 (-) 423 WP_006718996.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28557.87 Da        Isoelectric Point: 8.8911

>NTDB_id=1141699 DQN58_RS09305 WP_006718985.1 1917119..1917862(-) (comO) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
MMKNKFFYDVVYSRGQTLVALMISVALSSFLLLVIMQFYSQHQQQNRGMLLRLQLQTELQRVIQLIGKDLARSGFRAVSD
KLTKNNLALFELGNIPSSVFITQMNSERNNSCVLFFYDLDSNGCIGTGYQEDACILNKRNATKEIERELFGYRLHQKMLE
TRLTYKNTVKQNCNREECQRYTQQSACNHGGWVDLLDDKVYEISHLSFDWLAEKQGVEIRLAGHFKTNKKIKYETSLVVP
LLNGAKE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1141699 DQN58_RS09305 WP_006718985.1 1917119..1917862(-) (comO) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
ATGATGAAGAATAAGTTTTTTTATGACGTAGTGTATTCTCGTGGGCAAACGCTTGTTGCACTTATGATTTCAGTGGCGCT
TTCAAGTTTTTTACTGCTTGTTATTATGCAGTTTTATAGCCAGCATCAGCAACAGAACCGTGGAATGTTACTTCGTTTGC
AATTACAAACTGAGTTACAACGTGTAATCCAATTAATAGGCAAAGATTTGGCAAGAAGCGGCTTTCGTGCGGTAAGTGAT
AAATTGACGAAAAATAATTTGGCGTTATTTGAACTGGGAAATATTCCCTCATCGGTTTTTATCACTCAAATGAATAGCGA
GAGAAATAACAGCTGTGTGCTGTTTTTTTATGATTTGGATTCAAATGGGTGTATTGGTACTGGTTATCAAGAGGATGCTT
GTATCTTAAATAAACGTAATGCTACAAAGGAAATTGAACGGGAATTATTTGGTTACCGACTTCATCAAAAAATGTTGGAA
ACACGTTTAACTTACAAAAACACAGTAAAACAAAATTGCAATCGAGAGGAATGTCAACGCTATACCCAGCAGTCCGCTTG
TAATCATGGCGGTTGGGTGGATTTATTAGACGATAAGGTATATGAAATTTCCCATTTGAGCTTTGATTGGTTAGCAGAAA
AACAGGGCGTTGAAATACGTTTAGCAGGGCATTTCAAAACGAATAAAAAGATTAAATATGAAACCTCTCTCGTTGTGCCT
TTATTAAATGGAGCTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6KYX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

54.701

94.737

0.518

Multiple sequence alignment