Detailed information NTG1141599

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DQN91_RS02305
• Genome accession: NZ_LS483441
• Coordinates: 484590..485465 (-)
• Length: 291 a.a.
• NCBI ID: WP_042015098.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain NCTC12244
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 479590..490465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN91_RS02280 (NCTC12244_00458)	-	481337..482521 (+)	1185	WP_042015096.1	tetratricopeptide repeat protein	-
DQN91_RS02285 (NCTC12244_00459)	mutT	482530..482934 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
DQN91_RS02290 (NCTC12244_00460)	yacG	482992..483186 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
DQN91_RS02295 (NCTC12244_00461)	zapD	483197..483919 (-)	723	WP_010675825.1	cell division protein ZapD	-
DQN91_RS02300 (NCTC12244_00462)	coaE	483957..484571 (-)	615	WP_042015097.1	dephospho-CoA kinase	-
DQN91_RS02305 (NCTC12244_00463)	pilD	484590..485465 (-)	876	WP_042015098.1	A24 family peptidase	Machinery gene
DQN91_RS02310 (NCTC12244_00464)	pilC	485543..486784 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
DQN91_RS02315 (NCTC12244_00465)	pilB	486912..488618 (-)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
DQN91_RS02320	-	488622..489056 (-)	435	WP_042015100.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
DQN91_RS02325 (NCTC12244_00466)	nadC	489367..490230 (-)	864	WP_041213995.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32009.10 Da
• Isoelectric Point: 6.5955

>NTDB_id=1141599 DQN91_RS02305 WP_042015098.1 484590..485465(-) (pilD) [Aeromonas caviae strain NCTC12244]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMEQAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=1141599 DQN91_RS02305 WP_042015098.1 484590..485465(-) (pilD) [Aeromonas caviae strain NCTC12244]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGCAGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGAGGGCGCTGCCGCAACTGCCACGCTCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTGGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCTGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTAGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAAGAGGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	52.33	95.876	0.502
pilD	Acinetobacter nosocomialis M2	52.33	95.876	0.502
pilD	Neisseria gonorrhoeae MS11	50.958	89.691	0.457