Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPOKI112_RS01880 Genome accession   NZ_CP006821
Coordinates   387196..387996 (+) Length   266 a.a.
NCBI ID   WP_025309663.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 382196..392996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS01845 (HPOKI112_01935) pseH 382701..383243 (+) 543 WP_025309658.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HPOKI112_RS01850 (HPOKI112_01940) - 383176..384114 (-) 939 WP_025309659.1 tetraacyldisaccharide 4'-kinase -
  HPOKI112_RS01855 (HPOKI112_01945) - 384111..384893 (-) 783 WP_025309660.1 NAD+ synthase -
  HPOKI112_RS01865 ilvC 385142..386134 (+) 993 WP_025309661.1 ketol-acid reductoisomerase -
  HPOKI112_RS01870 (HPOKI112_01960) minD 386153..386959 (+) 807 WP_025309662.1 septum site-determining protein MinD -
  HPOKI112_RS01875 (HPOKI112_01965) minE 386956..387189 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPOKI112_RS01880 (HPOKI112_01970) dprA 387196..387996 (+) 801 WP_025309663.1 DNA-processing protein DprA Machinery gene
  HPOKI112_RS01885 (HPOKI112_01975) dprB 387993..388397 (+) 405 WP_025309664.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI112_RS01890 (HPOKI112_01985) - 388528..389418 (+) 891 WP_025309665.1 SEL1-like repeat protein -
  HPOKI112_RS01895 (HPOKI112_01990) - 389603..389941 (+) 339 WP_025275693.1 hypothetical protein -
  HPOKI112_RS01900 (HPOKI112_01995) - 389925..390485 (+) 561 WP_025275694.1 hypothetical protein -
  HPOKI112_RS01905 (HPOKI112_02000) - 390587..391468 (-) 882 WP_025275695.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29819.81 Da        Isoelectric Point: 9.1549

>NTDB_id=114149 HPOKI112_RS01880 WP_025309663.1 387196..387996(+) (dprA) [Helicobacter pylori oki112]
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=114149 HPOKI112_RS01880 WP_025309663.1 387196..387996(+) (dprA) [Helicobacter pylori oki112]
ATGAAAAGTAATTTCCAATACAGCACGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCACCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTGGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTAATCTATCCCACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCCCAGCGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATCAAAGACGAATTTTTAGAATATTGCGCCAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.241

100

0.962
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment