Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOKI112_RS01885 Genome accession   NZ_CP006821
Coordinates   387993..388397 (+) Length   134 a.a.
NCBI ID   WP_025309664.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 382993..393397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS01850 (HPOKI112_01940) - 383176..384114 (-) 939 WP_025309659.1 tetraacyldisaccharide 4'-kinase -
  HPOKI112_RS01855 (HPOKI112_01945) - 384111..384893 (-) 783 WP_025309660.1 NAD+ synthase -
  HPOKI112_RS01865 ilvC 385142..386134 (+) 993 WP_025309661.1 ketol-acid reductoisomerase -
  HPOKI112_RS01870 (HPOKI112_01960) minD 386153..386959 (+) 807 WP_025309662.1 septum site-determining protein MinD -
  HPOKI112_RS01875 (HPOKI112_01965) minE 386956..387189 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HPOKI112_RS01880 (HPOKI112_01970) dprA 387196..387996 (+) 801 WP_025309663.1 DNA-processing protein DprA Machinery gene
  HPOKI112_RS01885 (HPOKI112_01975) dprB 387993..388397 (+) 405 WP_025309664.1 Holliday junction resolvase RuvX Machinery gene
  HPOKI112_RS01890 (HPOKI112_01985) - 388528..389418 (+) 891 WP_025309665.1 SEL1-like repeat protein -
  HPOKI112_RS01895 (HPOKI112_01990) - 389603..389941 (+) 339 WP_025275693.1 hypothetical protein -
  HPOKI112_RS01900 (HPOKI112_01995) - 389925..390485 (+) 561 WP_025275694.1 hypothetical protein -
  HPOKI112_RS01905 (HPOKI112_02000) - 390587..391468 (-) 882 WP_025275695.1 RluA family pseudouridine synthase -
  HPOKI112_RS01910 (HPOKI112_02005) recJ 391468..393018 (-) 1551 WP_025309666.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15188.71 Da        Isoelectric Point: 9.5501

>NTDB_id=114150 HPOKI112_RS01885 WP_025309664.1 387993..388397(+) (dprB) [Helicobacter pylori oki112]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=114150 HPOKI112_RS01885 WP_025309664.1 387993..388397(+) (dprB) [Helicobacter pylori oki112]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963

Multiple sequence alignment