Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DQN79_RS00300 Genome accession   NZ_LS483435
Coordinates   62878..65013 (-) Length   711 a.a.
NCBI ID   WP_003774174.1    Uniprot ID   D4DTJ8
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57878..70013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS00285 (NCTC11050_00058) rpsT 58437..58700 (-) 264 WP_041961506.1 30S ribosomal protein S20 -
  DQN79_RS00290 (NCTC11050_00059) - 58980..60122 (+) 1143 WP_040666308.1 extracellular solute-binding protein -
  DQN79_RS00295 (NCTC11050_00060) - 60190..62067 (-) 1878 WP_041961507.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  DQN79_RS00300 (NCTC11050_00061) pilQ 62878..65013 (-) 2136 WP_003774174.1 type IV pilus secretin PilQ Machinery gene
  DQN79_RS00305 (NCTC11050_00062) - 65045..65551 (-) 507 WP_082019647.1 pilus assembly protein PilP -
  DQN79_RS00310 (NCTC11050_00063) - 65570..66211 (-) 642 WP_003774170.1 type 4a pilus biogenesis protein PilO -
  DQN79_RS00315 (NCTC11050_00064) - 66198..66857 (-) 660 WP_003774168.1 PilN domain-containing protein -
  DQN79_RS00320 (NCTC11050_00065) pilM 66860..67951 (-) 1092 WP_041961633.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77423.27 Da        Isoelectric Point: 9.8240

>NTDB_id=1141384 DQN79_RS00300 WP_003774174.1 62878..65013(-) (pilQ) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MKKLVAVKIFPILGMTLAVQSVFAGNITDINVSTLPNNQKIVKVKFDKDTVLPSNSMVNGPSSRVALDFPSTGVALPQST
FEYADSLLNQVTAVKNGNNARVLLGLNRLGQYKAEVQGKEVWIYINEAVSSSHTTPSAQMVNSKTASSEVAAVTVDFRKS
GRSNGIVEIMTRKYQGKPDIKQNNGSLTITLKNYPLPVQAQRNLDVTDFSTPVRNVILKRIGNDTQVVIKNQGAWAHSIK
TMNDRLVIEITQKSSVEGSGLPSNQNKSFKGNKVSLDFQDVDVRTVLQILAKESGMNIVASDSVTGKMTLTLKDVPWDQA
LDLVMQARNLDMRKTGNVINVAPRDELLAKDKAILTQQREIDELGPLYSRTFQLKYKNVEEFRKILKLDDSSSSGNGSKT
ILSSRGSALIDPATNTLVITDNTFILQKFEKLIAELDVPARQVMVEARIVEAEDGFSRQLGVKFGYAGSNGKNSWGSNWA
NAGANRNSYVDKQRTLANWSRNPSQDIPALPAWTVDPNVNLPIAAATSSIALVHALSSGALGLELSAQQAQNKLKIVSTP
RVLTQDRKEAIIEAGTEVPYQEASSSGATSTSFKKAVLGMTVTPNITPDGQIIMDIKINKDSVNSDCRATEPCINTQRLN
TNVMVEDGGTLILGGIYQEENSEGVSKVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIVDNIGSNLRY

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=1141384 DQN79_RS00300 WP_003774174.1 62878..65013(-) (pilQ) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAAGAAATTAGTAGCTGTTAAAATTTTTCCAATTTTAGGAATGACATTGGCTGTACAATCTGTCTTTGCAGGCAATAT
TACTGATATTAATGTTTCTACATTGCCAAATAATCAGAAGATTGTTAAAGTTAAATTTGATAAAGATACAGTTTTGCCAT
CAAATTCGATGGTAAATGGACCTTCTTCTCGTGTTGCTTTAGATTTTCCATCTACTGGGGTGGCATTGCCACAATCTACA
TTTGAGTATGCAGATTCATTATTAAACCAGGTTACAGCAGTAAAAAATGGAAATAATGCTCGTGTATTGTTGGGTCTAAA
CAGATTAGGACAGTATAAAGCAGAGGTTCAAGGTAAAGAAGTTTGGATTTATATTAATGAAGCGGTGTCTTCGAGTCATA
CGACACCCAGTGCTCAAATGGTAAATAGTAAAACTGCAAGTTCTGAAGTTGCTGCAGTTACGGTTGATTTTAGAAAGTCA
GGAAGATCAAATGGTATTGTTGAGATCATGACTAGAAAATATCAGGGTAAACCTGATATTAAACAGAATAATGGTAGTTT
AACAATTACATTAAAAAATTATCCTCTCCCTGTTCAAGCTCAGCGTAATTTGGATGTGACTGATTTTAGTACACCTGTTC
GAAATGTTATTCTAAAGAGAATTGGTAATGACACTCAGGTGGTTATCAAAAATCAAGGCGCATGGGCTCATAGCATTAAA
ACAATGAATGATCGCCTTGTTATTGAAATAACTCAGAAATCATCAGTTGAAGGTTCAGGTCTCCCTTCTAATCAAAATAA
ATCATTTAAGGGTAATAAAGTTTCCTTGGATTTTCAAGATGTTGATGTCCGTACAGTGTTGCAAATTCTGGCTAAAGAGT
CAGGTATGAATATTGTAGCTAGCGATAGTGTTACAGGAAAAATGACATTGACTCTTAAAGATGTTCCTTGGGATCAAGCG
TTAGATTTAGTAATGCAAGCTCGCAATTTGGATATGCGGAAAACAGGTAATGTAATTAATGTTGCACCTAGAGATGAATT
GTTAGCTAAAGATAAAGCAATTTTGACTCAACAGAGGGAAATTGATGAGTTAGGTCCTTTGTATTCTAGAACCTTCCAAT
TAAAATATAAAAATGTAGAGGAATTCCGTAAGATACTGAAATTAGATGATTCTTCTAGTAGTGGTAATGGAAGTAAAACA
ATTTTGAGTAGTCGGGGTAGTGCATTAATTGATCCAGCTACCAATACTTTAGTTATTACTGATAATACTTTTATACTGCA
AAAATTTGAAAAATTAATTGCAGAATTAGATGTTCCCGCACGGCAGGTGATGGTTGAGGCTAGAATTGTGGAGGCGGAAG
ACGGCTTCTCACGTCAATTGGGTGTTAAATTCGGATATGCAGGTTCAAATGGTAAAAATAGTTGGGGGAGTAACTGGGCT
AATGCTGGTGCTAACCGTAATAGTTATGTAGATAAGCAAAGAACTCTTGCAAATTGGAGTAGAAATCCATCCCAAGATAT
TCCAGCATTGCCAGCATGGACTGTTGACCCTAATGTGAATTTACCTATAGCTGCTGCTACGTCAAGTATTGCTTTGGTTC
ATGCGTTATCTTCTGGTGCCCTGGGGTTAGAGCTGTCTGCACAACAGGCGCAGAATAAGTTGAAAATAGTTTCAACTCCT
CGTGTTTTAACGCAGGATCGCAAAGAAGCGATAATTGAAGCAGGTACGGAAGTTCCGTATCAAGAAGCCTCTTCGAGTGG
TGCTACATCTACGTCATTTAAGAAAGCAGTATTGGGTATGACCGTAACGCCTAATATTACTCCCGATGGTCAGATAATTA
TGGATATTAAGATCAATAAAGATTCAGTAAATTCAGATTGCAGGGCTACCGAACCTTGTATAAATACTCAGCGTTTAAAT
ACCAATGTTATGGTAGAAGACGGTGGAACGCTAATTTTAGGTGGTATTTATCAAGAGGAAAACTCAGAAGGCGTAAGTAA
AGTTCCATTATTAGGCGATATTCCGGTTGTTGGAAACTTGTTTAAGTCGAAAACTAGATCTGATAAGAAAACTGAACTCT
TGATTTTCATTACTCCTCGTATTGTTGATAATATTGGTAGCAATTTGAGATATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(548-703)

Bacterial type II/III secretion system short domain (Secretin_N)

(370-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DTJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

52.239

100

0.541
  pilQ Neisseria meningitidis MC58

55.614

80.169

0.446
  pilQ Neisseria meningitidis M1080

55.614

80.169

0.446

Multiple sequence alignment