Detailed information NTG0114123

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI102_RS00210
• Genome accession: NZ_CP006820
• Coordinates: 37938..38933 (+)
• Length: 331 a.a.
• NCBI ID: WP_025275453.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki102
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32938..43933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI102_RS00180 (HPOKI102_00195)	panD	34357..34707 (+)	351	WP_025275449.1	aspartate 1-decarboxylase	-
HPOKI102_RS00185 (HPOKI102_00200)	-	34718..35011 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI102_RS00190 (HPOKI102_00205)	-	35011..36006 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI102_RS00195 (HPOKI102_00210)	comB6	36014..37069 (+)	1056	WP_025275451.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI102_RS00200 (HPOKI102_00215)	comB7	37085..37198 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI102_RS00205 (HPOKI102_00220)	comB8	37195..37938 (+)	744	WP_025275452.1	type IV secretion system protein	Machinery gene
HPOKI102_RS00210 (HPOKI102_00225)	comB9	37938..38933 (+)	996	WP_025275453.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI102_RS00215 (HPOKI102_00230)	comB10	38926..40062 (+)	1137	WP_025275454.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI102_RS00220 (HPOKI102_00235)	-	40132..41550 (+)	1419	WP_025275455.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI102_RS00225 (HPOKI102_00240)	gmd	41560..42705 (+)	1146	WP_025275456.1	GDP-mannose 4,6-dehydratase	-
HPOKI102_RS00230 (HPOKI102_00245)	-	42698..43630 (+)	933	WP_025275457.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 38110.88 Da
• Isoelectric Point: 9.3288

>NTDB_id=114123 HPOKI102_RS00210 WP_025275453.1 37938..38933(+) (comB9) [Helicobacter pylori oki102]
MRKFLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENALENAPTNNKPLKEEPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKW
YCLGICSKKSKPSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYL
CIRFVKKGKDE

Nucleotide

• Length: 996 bp

>NTDB_id=114123 HPOKI102_RS00210 WP_025275453.1 37938..38933(+) (comB9) [Helicobacter pylori oki102]
ATGCGGAAATTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATATTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTATGAAGCCACAAAATAAAGAAAATGCCCTTGAAAATGCCCTTGAAAATGCCCCCACAAACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCG
ATAACACCAATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAATCCAAACCCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTA
TTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAA
ATACTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTG
TGCATCCGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.468	100	0.955