Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPOKI102_RS00205 Genome accession   NZ_CP006820
Coordinates   37195..37938 (+) Length   247 a.a.
NCBI ID   WP_025275452.1    Uniprot ID   -
Organism   Helicobacter pylori oki102     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32195..42938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI102_RS00180 (HPOKI102_00195) panD 34357..34707 (+) 351 WP_025275449.1 aspartate 1-decarboxylase -
  HPOKI102_RS00185 (HPOKI102_00200) - 34718..35011 (+) 294 WP_000347915.1 YbaB/EbfC family nucleoid-associated protein -
  HPOKI102_RS00190 (HPOKI102_00205) - 35011..36006 (+) 996 WP_025275450.1 PDZ domain-containing protein -
  HPOKI102_RS00195 (HPOKI102_00210) comB6 36014..37069 (+) 1056 WP_025275451.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOKI102_RS00200 (HPOKI102_00215) comB7 37085..37198 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPOKI102_RS00205 (HPOKI102_00220) comB8 37195..37938 (+) 744 WP_025275452.1 type IV secretion system protein Machinery gene
  HPOKI102_RS00210 (HPOKI102_00225) comB9 37938..38933 (+) 996 WP_025275453.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOKI102_RS00215 (HPOKI102_00230) comB10 38926..40062 (+) 1137 WP_025275454.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOKI102_RS00220 (HPOKI102_00235) - 40132..41550 (+) 1419 WP_025275455.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOKI102_RS00225 (HPOKI102_00240) gmd 41560..42705 (+) 1146 WP_025275456.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28742.91 Da        Isoelectric Point: 8.9546

>NTDB_id=114122 HPOKI102_RS00205 WP_025275452.1 37195..37938(+) (comB8) [Helicobacter pylori oki102]
MKEKPFNSEQLNYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=114122 HPOKI102_RS00205 WP_025275452.1 37195..37938(+) (comB8) [Helicobacter pylori oki102]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGAACTATTTAGAAGAGCTTTTAAGTCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGCTGGAAAGAAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAGGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGCACTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment