Detailed information NTG0114120

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOKI102_RS00195
• Genome accession: NZ_CP006820
• Coordinates: 36014..37069 (+)
• Length: 351 a.a.
• NCBI ID: WP_025275451.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki102
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31014..42069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI102_RS00165 (HPOKI102_00180)	-	31434..31847 (+)	414	WP_001023008.1	universal stress protein	-
HPOKI102_RS00170 (HPOKI102_00185)	-	31870..32145 (+)	276	WP_000784919.1	ATP-dependent Clp protease adaptor ClpS	-
HPOKI102_RS00175 (HPOKI102_00190)	-	32145..34367 (+)	2223	WP_025275448.1	AAA family ATPase	-
HPOKI102_RS00180 (HPOKI102_00195)	panD	34357..34707 (+)	351	WP_025275449.1	aspartate 1-decarboxylase	-
HPOKI102_RS00185 (HPOKI102_00200)	-	34718..35011 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI102_RS00190 (HPOKI102_00205)	-	35011..36006 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI102_RS00195 (HPOKI102_00210)	comB6	36014..37069 (+)	1056	WP_025275451.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI102_RS00200 (HPOKI102_00215)	comB7	37085..37198 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI102_RS00205 (HPOKI102_00220)	comB8	37195..37938 (+)	744	WP_025275452.1	type IV secretion system protein	Machinery gene
HPOKI102_RS00210 (HPOKI102_00225)	comB9	37938..38933 (+)	996	WP_025275453.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI102_RS00215 (HPOKI102_00230)	comB10	38926..40062 (+)	1137	WP_025275454.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI102_RS00220 (HPOKI102_00235)	-	40132..41550 (+)	1419	WP_025275455.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39764.68 Da
• Isoelectric Point: 9.0413

>NTDB_id=114120 HPOKI102_RS00195 WP_025275451.1 36014..37069(+) (comB6) [Helicobacter pylori oki102]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLESLWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=114120 HPOKI102_RS00195 WP_025275451.1 36014..37069(+) (comB6) [Helicobacter pylori oki102]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGAAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAATCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGTATTTTGCAAGCACTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGAAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAAGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954