Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | DQN49_RS03465 | Genome accession | NZ_LS483429 |
| Coordinates | 660430..660843 (+) | Length | 137 a.a. |
| NCBI ID | WP_006995133.1 | Uniprot ID | - |
| Organism | Haemophilus aegyptius strain NCTC8502 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 655430..665843
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN49_RS03445 (NCTC8502_00698) | - | 655912..658512 (-) | 2601 | WP_006995137.1 | penicillin-binding protein 1A | - |
| DQN49_RS03450 (NCTC8502_00700) | - | 658611..659408 (+) | 798 | Protein_663 | competence protein ComA | - |
| DQN49_RS03455 (NCTC8502_00701) | comB | 659409..659915 (+) | 507 | WP_006995134.1 | competence protein ComB | Machinery gene |
| DQN49_RS03460 (NCTC8502_00702) | comC | 659912..660433 (+) | 522 | WP_005662592.1 | competence protein ComC | Machinery gene |
| DQN49_RS03465 (NCTC8502_00703) | comD | 660430..660843 (+) | 414 | WP_006995133.1 | pilus assembly protein PilP | Machinery gene |
| DQN49_RS03470 (NCTC8502_00704) | comE | 660853..662190 (+) | 1338 | WP_006995132.1 | type IV pilus secretin PilQ | Machinery gene |
| DQN49_RS03475 (NCTC8502_00705) | - | 662203..662889 (+) | 687 | WP_006995131.1 | ComF family protein | - |
| DQN49_RS03480 (NCTC8502_00706) | nfuA | 662965..663561 (+) | 597 | WP_006995130.1 | Fe-S biogenesis protein NfuA | - |
| DQN49_RS03485 | nudC | 663628..664423 (+) | 796 | Protein_670 | NAD(+) diphosphatase | - |
| DQN49_RS03490 (NCTC8502_00709) | - | 664459..665049 (+) | 591 | WP_006995127.1 | YjaG family protein | - |
| DQN49_RS03495 (NCTC8502_00710) | - | 665189..665461 (+) | 273 | WP_006995126.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.75 Da Isoelectric Point: 4.4355
>NTDB_id=1141223 DQN49_RS03465 WP_006995133.1 660430..660843(+) (comD) [Haemophilus aegyptius strain NCTC8502]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGIDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGIDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1141223 DQN49_RS03465 WP_006995133.1 660430..660843(+) (comD) [Haemophilus aegyptius strain NCTC8502]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
94.161 |
100 |
0.942 |
| comD | Haemophilus influenzae 86-028NP |
93.431 |
100 |
0.934 |