Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | DQN49_RS03455 | Genome accession | NZ_LS483429 |
| Coordinates | 659409..659915 (+) | Length | 168 a.a. |
| NCBI ID | WP_006995134.1 | Uniprot ID | A0AAV2U2E4 |
| Organism | Haemophilus aegyptius strain NCTC8502 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 654409..664915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN49_RS03435 (NCTC8502_00696) | - | 654512..654841 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| DQN49_RS03440 (NCTC8502_00697) | - | 654994..655839 (-) | 846 | WP_006995138.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| DQN49_RS03445 (NCTC8502_00698) | - | 655912..658512 (-) | 2601 | WP_006995137.1 | penicillin-binding protein 1A | - |
| DQN49_RS03450 (NCTC8502_00700) | - | 658611..659408 (+) | 798 | Protein_663 | competence protein ComA | - |
| DQN49_RS03455 (NCTC8502_00701) | comB | 659409..659915 (+) | 507 | WP_006995134.1 | competence protein ComB | Machinery gene |
| DQN49_RS03460 (NCTC8502_00702) | comC | 659912..660433 (+) | 522 | WP_005662592.1 | competence protein ComC | Machinery gene |
| DQN49_RS03465 (NCTC8502_00703) | comD | 660430..660843 (+) | 414 | WP_006995133.1 | pilus assembly protein PilP | Machinery gene |
| DQN49_RS03470 (NCTC8502_00704) | comE | 660853..662190 (+) | 1338 | WP_006995132.1 | type IV pilus secretin PilQ | Machinery gene |
| DQN49_RS03475 (NCTC8502_00705) | - | 662203..662889 (+) | 687 | WP_006995131.1 | ComF family protein | - |
| DQN49_RS03480 (NCTC8502_00706) | nfuA | 662965..663561 (+) | 597 | WP_006995130.1 | Fe-S biogenesis protein NfuA | - |
| DQN49_RS03485 | nudC | 663628..664423 (+) | 796 | Protein_670 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19737.61 Da Isoelectric Point: 8.5473
>NTDB_id=1141221 DQN49_RS03455 WP_006995134.1 659409..659915(+) (comB) [Haemophilus aegyptius strain NCTC8502]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKNTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKNTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=1141221 DQN49_RS03455 WP_006995134.1 659409..659915(+) (comB) [Haemophilus aegyptius strain NCTC8502]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAAATACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAAATACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
98.81 |
100 |
0.988 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |