Detailed information NTG1141194

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DQN52_RS09930
• Genome accession: NZ_LS483426
• Coordinates: 1835447..1836349 (-)
• Length: 300 a.a.
• NCBI ID: WP_003787782.1
• Uniprot ID: A0AAX2J6E6
• Organism: Kingella kingae strain NCTC10529
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1830447..1841349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN52_RS09900 (NCTC10529_01929)	-	1831567..1832760 (+)	1194	WP_003787791.1	acetate kinase	-
DQN52_RS09905 (NCTC10529_01930)	-	1832835..1833455 (-)	621	WP_003787790.1	L-threonylcarbamoyladenylate synthase	-
DQN52_RS09910 (NCTC10529_01931)	pncC	1833465..1833941 (-)	477	WP_003787789.1	nicotinamide-nucleotide amidase	-
DQN52_RS09915 (NCTC10529_01932)	zapD	1833961..1834722 (-)	762	WP_003787787.1	cell division protein ZapD	-
DQN52_RS09925 (NCTC10529_01933)	coaE	1834837..1835445 (-)	609	WP_003787784.1	dephospho-CoA kinase	-
DQN52_RS09930 (NCTC10529_01934)	pilD	1835447..1836349 (-)	903	WP_003787782.1	A24 family peptidase	Machinery gene
DQN52_RS09935 (NCTC10529_01935)	pilG	1836361..1837629 (-)	1269	WP_003787779.1	type II secretion system F family protein	Machinery gene
DQN52_RS09940 (NCTC10529_01936)	pilF	1837676..1839361 (-)	1686	WP_003787777.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DQN52_RS09945 (NCTC10529_01937)	lysA	1839547..1840773 (-)	1227	WP_003787776.1	diaminopimelate decarboxylase	-
DQN52_RS10840 (NCTC10529_01938)	lptM	1840773..1840934 (-)	162	WP_003787775.1	LPS translocon maturation chaperone LptM	-
DQN52_RS09950 (NCTC10529_01939)	cyaY	1841025..1841348 (+)	324	WP_099046165.1	iron donor protein CyaY	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 33368.63 Da
• Isoelectric Point: 7.8678

>NTDB_id=1141194 DQN52_RS09930 WP_003787782.1 1835447..1836349(-) (pilD) [Kingella kingae strain NCTC10529]
MNNLEIWIALLFGLLIGSFLNVVIYRLPVMLNRDWTEAACEQLNINDEFWQKQPASVEQGLREHFGLNRAVSGTFNLMTP
PSRCGNCGSAVRPWQNIPVLSWLMLRGKCAGCHKPISIRYPLVELLTGVLFAVMAFKYGWTWYTVGACLFTAYVVAMTFI
DADTQLLPDDLTIPLMRWGLLFNLLTGFIPLTQSVWGMLIGYMSLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLGAWI
LPVVIFAAAMVFLVVAIIRGIGKEQPMAYGPCLGVAGWLVFLFYDVVMRGVTAWLTGSGF

Nucleotide

• Length: 903 bp

>NTDB_id=1141194 DQN52_RS09930 WP_003787782.1 1835447..1836349(-) (pilD) [Kingella kingae strain NCTC10529]
ATGAACAATTTGGAAATTTGGATTGCGCTACTTTTCGGCTTACTCATCGGCAGCTTTTTAAATGTGGTCATTTATCGGCT
GCCCGTGATGCTTAACCGCGATTGGACAGAAGCAGCCTGCGAGCAACTCAATATCAACGATGAATTTTGGCAAAAGCAGC
CTGCATCCGTAGAACAAGGTCTGCGCGAACACTTTGGCTTAAACCGTGCTGTGTCAGGCACATTCAACTTGATGACACCG
CCATCGCGTTGTGGCAACTGCGGTTCAGCCGTGCGTCCTTGGCAAAACATTCCTGTGTTGAGCTGGTTGATGTTGCGTGG
CAAATGTGCAGGCTGCCACAAACCCATTAGCATTCGCTATCCTTTGGTAGAACTACTCACAGGCGTGTTGTTTGCGGTAA
TGGCATTCAAGTATGGCTGGACTTGGTACACCGTAGGCGCGTGTTTGTTTACCGCTTATGTCGTTGCCATGACCTTTATT
GATGCCGACACCCAACTTTTGCCCGATGACTTAACCATTCCATTGATGCGCTGGGGCTTGTTGTTTAACTTGCTTACAGG
CTTCATTCCGCTAACGCAATCGGTTTGGGGCATGTTGATTGGCTACATGAGTCTGTGGACGCTGTCGCAAACCTATAAAC
TAATTCGTGGCGTGGACGGCATGGGCGCAGGCGATTTCAAAATGCTGGCTGCGATTGGTGCGTGGCTGGGTGCATGGATT
TTGCCTGTGGTGATTTTTGCTGCGGCGATGGTGTTTTTGGTGGTTGCCATTATTCGGGGCATTGGCAAAGAACAGCCAAT
GGCATACGGCCCGTGTTTGGGCGTTGCCGGCTGGTTGGTCTTTTTGTTTTACGATGTGGTGATGCGTGGCGTAACAGCTT
GGCTCACTGGGTCGGGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (11-137)

• Type IV leader peptidase family (Peptidase_A24) (150-256)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	51.211	96.333	0.493
pilD	Vibrio cholerae strain A1552	41.812	95.667	0.4
pilD	Acinetobacter baumannii D1279779	41.237	97	0.4
pilD	Acinetobacter nosocomialis M2	40.55	97	0.393
pilD	Vibrio campbellii strain DS40M4	41.877	92.333	0.387