Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQN40_RS03135 Genome accession   NZ_LS483413
Coordinates   588765..589574 (+) Length   269 a.a.
NCBI ID   WP_003059746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 583765..594574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS03110 (NCTC7136_00640) - 584138..584839 (-) 702 WP_003057191.1 amino acid ABC transporter permease -
  DQN40_RS03115 (NCTC7136_00641) - 584853..585653 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  DQN40_RS03120 (NCTC7136_00642) - 585653..586447 (-) 795 WP_084916254.1 amino acid ABC transporter ATP-binding protein -
  DQN40_RS03125 (NCTC7136_00643) vicR 586706..587416 (+) 711 WP_084916255.1 response regulator YycF Regulator
  DQN40_RS03130 (NCTC7136_00644) vicK 587409..588761 (+) 1353 WP_084916257.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN40_RS03135 (NCTC7136_00645) vicX 588765..589574 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  DQN40_RS03140 (NCTC7136_00646) rnc 590332..591024 (+) 693 WP_003057240.1 ribonuclease III -
  DQN40_RS03145 (NCTC7136_00647) smc 591025..594570 (+) 3546 WP_046177372.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30157.38 Da        Isoelectric Point: 6.0739

>NTDB_id=1140699 DQN40_RS03135 WP_003059746.1 588765..589574(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1140699 DQN40_RS03135 WP_003059746.1 588765..589574(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCAGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment