Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DQN24_RS08900 Genome accession   NZ_LS483411
Coordinates   1818230..1818577 (-) Length   115 a.a.
NCBI ID   WP_021034824.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11426     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1813230..1823577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN24_RS08880 (NCTC11426_01776) bioB 1813619..1814620 (-) 1002 WP_014550962.1 biotin synthase BioB -
  DQN24_RS08885 (NCTC11426_01777) thiQ 1814733..1815380 (-) 648 WP_021034827.1 thiamine ABC transporter ATP-binding protein -
  DQN24_RS08890 (NCTC11426_01778) thiP 1815364..1816980 (-) 1617 WP_021034826.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DQN24_RS08895 (NCTC11426_01779) thiB 1816985..1817983 (-) 999 WP_111695731.1 thiamine ABC transporter substrate binding subunit -
  DQN24_RS08900 (NCTC11426_01781) comE1/comEA 1818230..1818577 (-) 348 WP_021034824.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQN24_RS08905 (NCTC11426_01782) ispH 1818745..1819689 (-) 945 WP_021034822.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DQN24_RS08910 (NCTC11426_01783) lspA 1819686..1820201 (-) 516 WP_021034821.1 signal peptidase II -
  DQN24_RS08915 (NCTC11426_01784) - 1820271..1821830 (-) 1560 WP_021034820.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12437.34 Da        Isoelectric Point: 8.0084

>NTDB_id=1140673 DQN24_RS08900 WP_021034824.1 1818230..1818577(-) (comE1/comEA) [Haemophilus influenzae strain NCTC11426]
MKLMKTLFTSFVLCGALAAGSTFAEDKVVEQTTQAVVTTQTDSQVAAAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1140673 DQN24_RS08900 WP_021034824.1 1818230..1818577(-) (comE1/comEA) [Haemophilus influenzae strain NCTC11426]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGGCACTTGCAGCTGGTTCCACTTTTGCTGAAGACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCAGCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

81.25

97.391

0.791
  comEA/comE1 Glaesserella parasuis strain SC1401

58.879

93.043

0.548
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment