Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQN33_RS03080 Genome accession   NZ_LS483408
Coordinates   580574..581383 (+) Length   269 a.a.
NCBI ID   WP_046393354.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC4674     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 575574..586383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN33_RS03055 (NCTC4674_00630) - 575930..576631 (-) 702 WP_012658075.1 amino acid ABC transporter permease -
  DQN33_RS03060 (NCTC4674_00631) - 576646..577461 (-) 816 WP_012658076.1 transporter substrate-binding domain-containing protein -
  DQN33_RS03065 (NCTC4674_00632) - 577475..578254 (-) 780 WP_012658077.1 amino acid ABC transporter ATP-binding protein -
  DQN33_RS03070 (NCTC4674_00633) vicR 578509..579219 (+) 711 WP_015912156.1 response regulator YycF Regulator
  DQN33_RS03075 (NCTC4674_00634) vicK 579212..580570 (+) 1359 WP_012658078.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN33_RS03080 (NCTC4674_00635) vicX 580574..581383 (+) 810 WP_046393354.1 MBL fold metallo-hydrolase Regulator
  DQN33_RS03085 (NCTC4674_00636) rnc 581542..582234 (+) 693 WP_012658080.1 ribonuclease III -
  DQN33_RS03090 (NCTC4674_00637) smc 582235..585780 (+) 3546 WP_046389185.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30200.29 Da        Isoelectric Point: 5.9920

>NTDB_id=1140501 DQN33_RS03080 WP_046393354.1 580574..581383(+) (vicX) [Streptococcus uberis strain NCTC4674]
MEIEGFNYSILASGSTGNSFYLETPKKKILVDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARKYHLD
VYANEKTWQILDERNMIGKIDVSQKHVFERDKMITFGDIDIESFGVSHDAYDPQFYRFMKDNKSFVMLTDTGYVSDRMSG
IIENADAYLIESNHDIEILRSGSYPWSLKQRILSDKGHLSNEDGAGAMIRSMGNKTKKIYLGHLSKENNIKELAHMTMEN
QLAKADLPVGSAFKVLDTSPDSACPLTSI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1140501 DQN33_RS03080 WP_046393354.1 580574..581383(+) (vicX) [Streptococcus uberis strain NCTC4674]
ATGGAAATAGAAGGATTTAATTACAGTATATTAGCATCAGGGTCAACGGGAAATAGTTTTTATTTAGAAACACCTAAAAA
GAAAATTTTGGTTGATGCTGGTTTAACTGGCAAAAAAATAACCAGCCTTTTAGCAGAAATTGATCGAAAACCAGAAGATT
TGGATGCTATTTTCATCACCCATGAACATTCAGATCATATCAAAGGGGTTGGAGTATTAGCTCGAAAATACCACTTAGAC
GTATATGCTAATGAGAAAACCTGGCAAATTTTGGATGAACGCAATATGATTGGGAAAATTGATGTTTCCCAAAAACATGT
CTTTGAAAGAGATAAAATGATTACTTTTGGAGATATTGATATTGAAAGTTTTGGAGTGAGTCATGATGCTTATGATCCTC
AATTTTATCGTTTCATGAAAGATAACAAATCTTTTGTCATGTTGACTGATACGGGTTATGTTAGTGACAGAATGTCTGGT
ATTATTGAAAATGCAGATGCCTATTTGATAGAATCCAATCATGATATTGAAATATTGCGTTCAGGTTCATACCCTTGGAG
TTTAAAACAACGCATCCTTTCTGATAAAGGTCATCTTTCAAATGAGGATGGCGCAGGGGCGATGATTCGTAGCATGGGAA
ATAAAACCAAAAAAATTTATTTGGGGCATTTGAGTAAAGAAAATAACATCAAAGAATTAGCTCACATGACCATGGAAAAT
CAGTTGGCTAAAGCCGACTTACCAGTTGGATCAGCATTTAAGGTATTAGATACTTCCCCTGATTCAGCTTGCCCTTTAAC
CAGCATATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment