Detailed information NTG1140365

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DQN23_RS07580
• Genome accession: NZ_LS483403
• Coordinates: 1506351..1506857 (-)
• Length: 168 a.a.
• NCBI ID: WP_020917424.1
• Uniprot ID: A0AB33ANQ2
• Organism: Streptococcus lutetiensis strain NCTC13774
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1507404..1508357	1506351..1506857	flank	547

Gene organization within MGE regions

Location: 1506351..1508357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN23_RS07580 (NCTC13774_01587)	ssbA	1506351..1506857 (-)	507	WP_020917424.1	single-stranded DNA-binding protein	Machinery gene
DQN23_RS07585 (NCTC13774_01588)	rpsF	1506869..1507159 (-)	291	WP_006531977.1	30S ribosomal protein S6	-
DQN23_RS07590 (NCTC13774_01589)	-	1507404..1508357 (+)	954	WP_111712989.1	IS30 family transposase	-

Sequence

Protein

• Length: 168 a.a.
• Molecular weight: 18641.27 Da
• Isoelectric Point: 4.7294

>NTDB_id=1140365 DQN23_RS07580 WP_020917424.1 1506351..1506857(-) (ssbA) [Streptococcus lutetiensis strain NCTC13774]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGEFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide

• Length: 507 bp

>NTDB_id=1140365 DQN23_RS07580 WP_020917424.1 1506351..1506857(-) (ssbA) [Streptococcus lutetiensis strain NCTC13774]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGAATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	60.112	100	0.637
ssb	Latilactobacillus sakei subsp. sakei 23K	61.765	100	0.625
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.095	0.369