Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   DQN23_RS06530 Genome accession   NZ_LS483403
Coordinates   1303915..1304919 (-) Length   334 a.a.
NCBI ID   WP_020917239.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1298915..1309919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS06515 (NCTC13774_01359) thrS 1299189..1301135 (-) 1947 WP_061408344.1 threonine--tRNA ligase -
  DQN23_RS06520 (NCTC13774_01361) - 1301487..1302821 (-) 1335 WP_020917237.1 glycosyltransferase family 4 protein -
  DQN23_RS06525 (NCTC13774_01362) - 1302823..1303821 (-) 999 WP_111712946.1 glycosyltransferase -
  DQN23_RS06530 (NCTC13774_01363) ccpA 1303915..1304919 (-) 1005 WP_020917239.1 catabolite control protein A Regulator
  DQN23_RS06535 (NCTC13774_01364) - 1305261..1306346 (+) 1086 WP_020917241.1 Xaa-Pro peptidase family protein -
  DQN23_RS06540 (NCTC13774_01365) - 1306531..1306824 (+) 294 WP_230318060.1 NUDIX domain-containing protein -
  DQN23_RS09080 (NCTC13774_01366) - 1306852..1307007 (-) 156 WP_164550174.1 hypothetical protein -
  DQN23_RS06545 (NCTC13774_01367) - 1307108..1307329 (+) 222 WP_181949887.1 hypothetical protein -
  DQN23_RS06550 (NCTC13774_01368) - 1307416..1308093 (+) 678 WP_020917244.1 NAD(P)H-dependent oxidoreductase -
  DQN23_RS06555 (NCTC13774_01369) - 1308132..1309477 (-) 1346 Protein_1232 dihydrolipoyl dehydrogenase family protein -
  DQN23_RS09325 - 1309488..1309676 (-) 189 WP_228380480.1 hypothetical protein -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36575.66 Da        Isoelectric Point: 5.7584

>NTDB_id=1140361 DQN23_RS06530 WP_020917239.1 1303915..1304919(-) (ccpA) [Streptococcus lutetiensis strain NCTC13774]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVINTLLAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVADAVDILAKNNKDIAFVSGPLIDDINGKVRLAGYKEGLEKNNLSFKEGLVFEAHYSYKDGYELAQRVMNSG
ATAAYVAEDELAAGLLNGLFAAGKKVPEDFEILTSNDSPITSYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKGI
ILNHGLKLRGTTRQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1140361 DQN23_RS06530 WP_020917239.1 1303915..1304919(-) (ccpA) [Streptococcus lutetiensis strain NCTC13774]
ATGAACACTGATGATACGATTACAATTTATGATGTTGCACGAGAAGCAGGCGTCTCAATGGCAACAGTTAGTCGTGTTGT
AAATGGCAATAAAAATGTAAAGGAAAACACTCGTAAAAAAGTACTTGAAGTTATTGACCGTTTAGACTATCGTCCAAATG
CAGTTGCTCGTGGTTTGGCAAGTAAAAAAACTACGACAGTTGGTGTTGTTATTCCAAATATCGCTAATAGCTATTTCTCA
ATTTTAGCGAAAGGTATCGACGATATTGCTGCAATGTACAAATACAATATCGTTCTTGCGTCAAGTGATGAAGATGACGA
TAAAGAAGTTAATGTTATTAACACTTTGCTTGCAAAACAAGTGGATGGTATTATCTTCATGGGACACCATTTAACAGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTGGTTCTAGCAGGAACAGTTGATTTAGAACACCAACTTCCAAGT
GTTAATATTGATTACAAAGCTGCCGTGGCTGATGCTGTTGATATTTTGGCTAAAAATAACAAAGATATTGCCTTTGTTTC
AGGACCACTTATCGATGACATTAACGGTAAAGTTCGTCTTGCAGGATACAAAGAAGGACTTGAAAAGAACAACCTATCAT
TCAAAGAAGGACTTGTATTTGAAGCTCACTACAGCTACAAAGATGGTTATGAACTAGCTCAACGCGTGATGAATTCAGGT
GCTACAGCTGCTTATGTTGCTGAAGACGAACTAGCTGCAGGTCTTTTGAATGGATTGTTTGCCGCAGGTAAAAAAGTTCC
TGAAGACTTTGAAATTCTTACAAGTAATGATTCACCAATCACATCATACACTCGTCCAAACCTAAGCTCAATTAGCCAAC
CAGTTTATGACCTTGGTGCGGTAAGTATGCGTATGTTGACTAAAATCATGAACAAAGAAGAACTTGAAGAAAAAGGAATT
ATTCTTAATCATGGTCTTAAATTGCGTGGTACTACACGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.042

100

0.79

  ccpA Streptococcus pneumoniae D39

76.647

100

0.766

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.193

99.102

0.557


Multiple sequence alignment