Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQN23_RS06435 Genome accession   NZ_LS483403
Coordinates   1281472..1282281 (-) Length   269 a.a.
NCBI ID   WP_058814132.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1276472..1287281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS06425 (NCTC13774_01339) smc 1276873..1280412 (-) 3540 WP_111712941.1 chromosome segregation protein SMC -
  DQN23_RS06430 (NCTC13774_01340) rnc 1280565..1281251 (-) 687 WP_020917219.1 ribonuclease III -
  DQN23_RS06435 (NCTC13774_01341) vicX 1281472..1282281 (-) 810 WP_058814132.1 MBL fold metallo-hydrolase Regulator
  DQN23_RS06440 (NCTC13774_01342) vicK 1282282..1283634 (-) 1353 WP_111712942.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN23_RS06445 (NCTC13774_01343) vicR 1283627..1284337 (-) 711 WP_039696509.1 response regulator YycF Regulator
  DQN23_RS06450 (NCTC13774_01344) - 1284649..1285407 (+) 759 WP_020917223.1 amino acid ABC transporter ATP-binding protein -
  DQN23_RS06455 (NCTC13774_01345) - 1285424..1286236 (+) 813 WP_020917224.1 transporter substrate-binding domain-containing protein -
  DQN23_RS06460 (NCTC13774_01346) - 1286252..1286959 (+) 708 WP_020917225.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30099.07 Da        Isoelectric Point: 5.7857

>NTDB_id=1140358 DQN23_RS06435 WP_058814132.1 1281472..1282281(-) (vicX) [Streptococcus lutetiensis strain NCTC13774]
MSENAFKYSVLASGSTGNSFYVETPQKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARRYNLD
VYANAKTWQMIDERNMIGKLDVGQKHVFERGKTLTFGDIDIESFGVSHDAVDPQFYRLMKDNKSFVVLTDTGYVSDRMAG
VIENADGYLIESNHDVEILRAGSYPWSLKQRILSDRGHLSNEDGADTMIRTIGNRTKKIYLGHLSKENNIKELAHMTMEN
NLMKADFAVGHDMTVFDTSPDEAMPLAGL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1140358 DQN23_RS06435 WP_058814132.1 1281472..1282281(-) (vicX) [Streptococcus lutetiensis strain NCTC13774]
ATGTCTGAGAATGCTTTTAAATACAGTGTCTTAGCCTCCGGTTCAACTGGAAATTCATTTTATGTGGAAACGCCACAGAA
ACGTCTTTTGATAGATGCAGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGAAAACCAGAAGATT
TGGATGCTATTTTGATTACGCACGAACACTCTGACCATATTAAAGGAGTTGGAGTGCTGGCTCGCAGATACAATCTTGAT
GTATATGCCAATGCCAAAACTTGGCAAATGATTGATGAGCGCAACATGATTGGAAAACTTGACGTTGGGCAAAAACATGT
CTTTGAACGTGGTAAAACATTGACTTTTGGTGATATTGATATTGAAAGTTTTGGAGTCAGTCACGATGCTGTCGATCCGC
AATTTTACCGTTTGATGAAAGATAATAAGTCATTTGTCGTTCTGACAGATACGGGTTACGTTAGTGACCGAATGGCGGGT
GTGATTGAAAATGCTGATGGTTATCTGATTGAGTCAAACCATGATGTTGAGATTTTGCGTGCAGGTTCTTATCCATGGAG
CTTGAAACAACGTATTCTATCTGATCGTGGTCACTTGTCAAATGAAGATGGTGCTGATACCATGATTCGTACTATCGGCA
ATCGCACAAAGAAAATTTACCTTGGTCACTTGAGTAAAGAAAATAATATCAAAGAATTGGCTCATATGACTATGGAAAAT
AACTTGATGAAAGCCGATTTTGCTGTTGGTCATGACATGACCGTTTTTGATACATCACCTGATGAAGCAATGCCTTTAGC
AGGTCTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.903

99.257

0.773

Multiple sequence alignment