Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   DQM65_RS03345 Genome accession   NZ_LS483392
Coordinates   649935..650348 (-) Length   137 a.a.
NCBI ID   WP_111691237.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11931     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 644935..655348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS03320 (NCTC11931_00664) nudC 645455..646249 (-) 795 WP_042594793.1 NAD(+) diphosphatase -
  DQM65_RS03325 (NCTC11931_00665) nfuA 646317..646913 (-) 597 WP_050847361.1 Fe-S biogenesis protein NfuA -
  DQM65_RS03330 (NCTC11931_00666) - 646989..647675 (-) 687 WP_111691235.1 ComF family protein -
  DQM65_RS03335 (NCTC11931_00667) tnpA 648130..648585 (-) 456 WP_005652127.1 IS200/IS605 family transposase -
  DQM65_RS03340 (NCTC11931_00668) comE 648582..649925 (-) 1344 WP_111691236.1 type IV pilus secretin PilQ family protein Machinery gene
  DQM65_RS03345 (NCTC11931_00669) comD 649935..650348 (-) 414 WP_111691237.1 pilus assembly protein PilP Machinery gene
  DQM65_RS03350 (NCTC11931_00670) comC 650345..650866 (-) 522 WP_111691238.1 competence protein ComC Machinery gene
  DQM65_RS03355 (NCTC11931_00671) comB 650863..651369 (-) 507 WP_111691239.1 competence protein B Machinery gene
  DQM65_RS03360 (NCTC11931_00672) comA 651370..652167 (-) 798 WP_111691240.1 pilus assembly protein PilM Machinery gene
  DQM65_RS03365 (NCTC11931_00673) - 652266..654860 (+) 2595 WP_111691241.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15661.79 Da        Isoelectric Point: 4.4237

>NTDB_id=1140032 DQM65_RS03345 WP_111691237.1 649935..650348(-) (comD) [Haemophilus influenzae strain NCTC11931]
MKYWFYLITLFFMNCSWGQDPFDKTQRIHSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGDQCDGSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1140032 DQM65_RS03345 WP_111691237.1 649935..650348(-) (comD) [Haemophilus influenzae strain NCTC11931]
ATGAAGTATTGGTTTTACCTGATTACATTATTTTTTATGAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAGCG
TATCCATTCTCAGTTTGATAATGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GTGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTAGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAACTTGGGGATCAATGTGATGGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(32-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

94.161

100

0.942
  comD Haemophilus influenzae 86-028NP

93.431

100

0.934

Multiple sequence alignment