Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM63_RS05200 Genome accession   NZ_LS483385
Coordinates   1065094..1067055 (+) Length   653 a.a.
NCBI ID   WP_002900456.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060094..1072055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS05190 (NCTC7863_01020) - 1061033..1061773 (-) 741 WP_002900458.1 hypothetical protein -
  DQM63_RS05195 (NCTC7863_01021) - 1062010..1064808 (+) 2799 WP_002900457.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  DQM63_RS05200 (NCTC7863_01022) amiA 1065094..1067055 (+) 1962 WP_002900456.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS05205 (NCTC7863_01023) - 1067168..1068025 (+) 858 WP_002900455.1 GNAT family N-acetyltransferase -
  DQM63_RS05210 (NCTC7863_01024) - 1068145..1069047 (+) 903 WP_032908183.1 LysR family transcriptional regulator -
  DQM63_RS05215 (NCTC7863_01025) lspA 1069051..1069518 (+) 468 WP_002900453.1 signal peptidase II -
  DQM63_RS05220 (NCTC7863_01026) - 1069502..1070398 (+) 897 WP_002900452.1 RluA family pseudouridine synthase -
  DQM63_RS05225 (NCTC7863_01027) proB 1070514..1071623 (+) 1110 WP_032910434.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72418.03 Da        Isoelectric Point: 4.6054

>NTDB_id=1139632 DQM63_RS05200 WP_002900456.1 1065094..1067055(+) (amiA) [Streptococcus sanguinis strain NCTC7863]
MKASKWLIATGVALSAGLLLTACSQSSSSTNNYTYVYSSDPDSLNYLATNRATTGDVISNLVDGLFENDKYGNLVPSIAK
SWTVSKDGLTYTYKLRDDAKWYTSDGEEYAEVKAQDFVTGLKYAADENSEAIYLVQDSVKGLDAYIKGEDKNFDNVGVKA
IDDHTLQYTLTRPEPYWNSKTTSTILFPVNEEFLKAEGSNFGSVKPSSILYNGPYLLKSLTSKSVMEFVKNQNYYDKDNV
TLDSIKLTYYDGNDQEALIRNFSDGVYSTARLYPNSSGFASVKKKYADNIVYSPQDSTSYYYNFNYNRQSYNHTSKTTDA
QKSATNEAIMNKDFRQAINFAFDRTSYGAQGNGEDGATKVLRNTLVPPSFVQIGDKDFGTVVGEKLVNYGSQWQGIDLSD
AQDPYYNPEKAKAKFAEAKQALQAKGVEFPIHLDMPVDQSSTIGVQWASSTKQSIESALGAENVVIDLQKMSTDDLNNIT
YFANSAAQKDYDMSTGGWTGDYQDPSTYLDTLNIKNGGSLQNFGFEPGQDNDKIKELGLDTYTKMLEEANAETNDVQLRY
EKYAEAEAWLLDSGLIIPTVSQGATPSVTKSVPFTKAYSPVGVKGSAYNFKLTQLQKDVVTTKEYEAAKKKWKEEATAAN
KKAQEELADHVEK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1139632 DQM63_RS05200 WP_002900456.1 1065094..1067055(+) (amiA) [Streptococcus sanguinis strain NCTC7863]
ATGAAAGCATCAAAGTGGCTGATTGCGACTGGAGTTGCACTGAGTGCCGGGCTATTGCTGACGGCTTGTAGCCAGTCTTC
ATCTAGCACAAATAATTATACTTACGTTTATAGTTCAGACCCTGACAGCTTGAACTATCTTGCTACAAATCGTGCAACGA
CAGGTGATGTCATTTCCAACCTGGTTGATGGACTTTTTGAAAATGACAAGTACGGGAATCTGGTTCCCTCTATCGCGAAG
TCATGGACAGTTTCTAAGGACGGTCTGACCTATACTTATAAGCTGCGTGATGATGCTAAATGGTACACATCCGATGGTGA
AGAATATGCAGAAGTAAAGGCCCAGGACTTTGTGACTGGCTTGAAATATGCAGCGGATGAAAATTCTGAAGCTATTTATC
TAGTTCAGGACTCTGTGAAGGGCTTGGATGCTTATATCAAGGGTGAAGATAAGAATTTTGACAATGTTGGTGTCAAAGCT
ATTGATGACCATACCCTGCAATACACTCTGACCCGCCCTGAGCCTTACTGGAACTCTAAAACAACCAGCACAATTCTCTT
CCCAGTCAATGAAGAGTTTCTGAAAGCAGAAGGAAGCAATTTTGGCTCTGTCAAGCCATCTAGCATCCTCTACAATGGTC
CTTACTTGCTCAAGTCTCTGACTTCCAAGTCTGTGATGGAATTTGTCAAGAACCAAAATTACTACGATAAAGATAATGTC
ACTCTGGATAGTATCAAGCTGACCTATTATGATGGAAATGATCAGGAAGCGCTGATTCGTAACTTCAGCGATGGCGTTTA
CAGCACAGCTCGTCTCTATCCGAATAGCTCAGGCTTTGCTTCAGTCAAGAAGAAATATGCGGACAATATTGTATATAGCC
CGCAGGATTCTACTTCTTATTACTATAATTTCAACTACAACCGTCAGTCTTACAATCATACTTCTAAAACAACAGATGCT
CAAAAATCTGCTACTAACGAAGCAATCATGAACAAGGACTTCCGTCAGGCTATCAATTTTGCCTTTGACCGTACATCTTA
TGGTGCGCAAGGAAATGGTGAAGACGGAGCGACTAAGGTCTTGAGAAATACCTTGGTACCACCTAGCTTTGTCCAAATTG
GCGACAAGGATTTTGGAACTGTTGTTGGAGAAAAATTAGTCAACTATGGCAGCCAATGGCAAGGAATTGACCTCTCTGAC
GCTCAAGATCCTTACTACAATCCTGAAAAAGCCAAGGCGAAATTTGCAGAAGCGAAGCAAGCCTTGCAGGCTAAGGGAGT
TGAATTCCCAATTCACTTAGATATGCCTGTGGATCAGTCTAGCACGATTGGCGTTCAATGGGCTAGCTCAACCAAGCAGT
CTATCGAATCGGCTCTTGGAGCAGAAAATGTCGTCATTGACCTGCAAAAGATGAGCACAGACGATCTTAATAATATCACC
TATTTTGCTAACTCTGCTGCTCAGAAAGACTATGATATGTCTACTGGTGGCTGGACTGGTGACTACCAAGACCCATCTAC
CTACCTTGATACTCTCAATATCAAGAACGGCGGAAGCTTGCAAAACTTTGGTTTTGAGCCAGGTCAGGATAATGATAAGA
TTAAAGAGCTGGGCTTGGATACATATACTAAGATGCTGGAAGAAGCCAATGCTGAAACCAACGATGTGCAGCTGCGTTAC
GAAAAGTATGCAGAAGCGGAAGCTTGGTTGCTAGATAGCGGCCTGATTATCCCGACTGTTTCACAAGGAGCAACACCGTC
TGTTACTAAATCAGTGCCATTTACAAAGGCCTACTCACCAGTTGGTGTCAAAGGTTCAGCTTACAACTTCAAGCTGACCC
AGCTTCAGAAAGATGTAGTAACGACTAAAGAATACGAAGCGGCTAAGAAAAAATGGAAAGAAGAAGCTACTGCGGCAAAT
AAAAAAGCCCAGGAAGAACTTGCTGACCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.64

100

0.559
  amiA3 Streptococcus thermophilus LMD-9

55.251

100

0.556
  amiA3 Streptococcus thermophilus LMG 18311

55.099

100

0.554

Multiple sequence alignment