Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM67_RS04490 Genome accession   NZ_LS483383
Coordinates   880889..882853 (+) Length   654 a.a.
NCBI ID   WP_005590395.1    Uniprot ID   A0AAV3EI12
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 875889..887853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS04465 (NCTC12479_00862) - 877900..878205 (+) 306 WP_005590402.1 rhodanese-like domain-containing protein -
  DQM67_RS04470 (NCTC12479_00863) - 878223..879875 (+) 1653 WP_005590400.1 FAD-dependent oxidoreductase -
  DQM67_RS04475 (NCTC12479_00864) - 879872..880165 (+) 294 WP_005590398.1 rhodanese-like domain-containing protein -
  DQM67_RS04485 (NCTC12479_00865) - 880366..880620 (-) 255 WP_005590397.1 metal-sensitive transcriptional regulator -
  DQM67_RS04490 (NCTC12479_00866) amiA 880889..882853 (+) 1965 WP_005590395.1 peptide ABC transporter substrate-binding protein Regulator
  DQM67_RS04500 (NCTC12479_00868) - 883108..883524 (+) 417 WP_005590394.1 NUDIX hydrolase -
  DQM67_RS04505 (NCTC12479_00869) - 883566..884552 (-) 987 WP_005591942.1 L-lactate dehydrogenase -
  DQM67_RS04510 (NCTC12479_00870) gyrA 884759..887209 (+) 2451 WP_005590391.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72805.00 Da        Isoelectric Point: 4.9238

>NTDB_id=1139503 DQM67_RS04490 WP_005590395.1 880889..882853(+) (amiA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MKVSKMLLATGVVLSAGVFLSACGKSSSSTTTYSYVYASDPDSLNYLTTNRATTSDVITNLVDGLLENDEYGNLVPSLAE
SWTVSQDGLTYTYKLRKDAKWFNVDGEEVASVKAQDFVTGLKYVADQKSEALYLIQDSISGLDAYVKGDEKDFSKVGVKA
VDDYTVQYTLTRPEPYWNSKTTNNILFPVNEEFLKSKGKDFGSVDPSSILYNGPFLLKSLTSKSSMEFVKNPNYYDKDKV
SLEHVKLTYYDGSDQESLIRNFSDGAYSGARLYPNTSGFAAVKKKYADNILYSPQDATSYYFNFNFNRQSYNHTSKTSDD
QKNATKEAVLNKDFRQAVNFSLDRTSYGAQSNGKDGATKLLRNTLVPPTFVQIGDQTFGQVVASKLVNYGTEWANIDLTD
AQDAYYNPEKAKARFAKAKEALESKGVQFPIHLDLPVDQADKVGIQWASSVKQSIESTLGAENVVIDLQKISVDDLNNIT
YFANTAAQKDYDFYTGGWSADYQDPSTYLDTLNVNNGASLQNFGFEPGQDMDKMKELGLDTYTKMLEEANAETTDVKVRY
EKYADAQAWLLDSGIIMPTISGGGSPSVSKSKPFSRAYSLVGIKGSGFNFKYTKLRSEIVTTKEYEEAKKKWQEKTLESN
KKAQEELADHIEKK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1139503 DQM67_RS04490 WP_005590395.1 880889..882853(+) (amiA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAAAGTATCAAAAATGCTTTTAGCTACTGGGGTGGTACTCAGTGCAGGAGTATTCTTGTCAGCTTGTGGCAAATCTTC
ATCCAGCACAACCACATATTCTTATGTTTATGCCAGCGATCCAGATAGTTTGAACTACCTGACCACTAACCGTGCAACTA
CATCAGACGTTATTACAAACCTTGTAGATGGTCTTTTGGAAAATGATGAATATGGAAATCTAGTTCCTTCTCTTGCAGAA
TCATGGACAGTTTCTCAAGACGGCCTGACTTACACATATAAGCTTCGTAAGGATGCTAAGTGGTTCAATGTTGATGGAGA
AGAAGTCGCAAGTGTGAAAGCTCAAGACTTTGTGACTGGACTTAAATATGTGGCTGACCAGAAGTCTGAAGCCCTTTACT
TAATTCAGGACTCGATTAGTGGCTTAGATGCCTATGTCAAAGGTGATGAAAAAGACTTTTCAAAAGTCGGAGTGAAGGCA
GTAGATGATTATACGGTTCAATACACGCTGACACGCCCAGAGCCTTATTGGAACTCTAAAACGACGAATAATATCTTGTT
CCCTGTCAATGAAGAATTTTTGAAGTCTAAAGGAAAAGATTTTGGTTCTGTTGATCCATCAAGTATTCTTTACAACGGTC
CTTTCCTTTTGAAATCTTTGACTTCTAAATCGTCTATGGAATTTGTTAAGAATCCAAATTATTACGATAAGGACAAGGTC
AGTCTAGAACATGTTAAATTAACCTACTATGATGGATCAGACCAAGAATCTTTAATTCGCAACTTCAGTGATGGTGCTTA
TAGTGGTGCCCGTCTCTATCCGAATACTTCAGGATTTGCGGCAGTTAAGAAGAAATATGCGGACAATATCCTTTATAGCC
CACAGGATGCGACCTCATATTACTTTAATTTCAACTTCAACCGTCAATCATACAATCACACTTCCAAAACAAGTGATGAT
CAAAAGAATGCAACAAAAGAAGCTGTTTTAAATAAGGACTTCCGTCAGGCCGTCAATTTTTCCCTTGATCGGACTTCTTA
TGGTGCGCAAAGTAATGGTAAAGATGGAGCTACTAAGCTGTTGAGAAATACGCTTGTTCCTCCAACATTTGTTCAAATTG
GCGATCAAACTTTTGGCCAAGTTGTTGCTTCTAAATTAGTGAATTATGGTACAGAATGGGCGAATATCGACCTGACAGAT
GCTCAAGATGCTTATTATAATCCAGAAAAAGCCAAGGCAAGATTTGCTAAGGCTAAGGAAGCTTTAGAGTCTAAGGGAGT
TCAATTCCCAATCCATTTAGACCTTCCTGTGGACCAAGCTGACAAGGTGGGCATCCAATGGGCAAGCTCAGTGAAACAAT
CTATCGAATCAACCTTGGGTGCAGAAAATGTAGTGATTGACCTGCAGAAGATTAGTGTGGATGATTTGAACAACATCACC
TATTTTGCAAATACTGCAGCTCAAAAGGACTATGACTTCTATACAGGGGGCTGGTCAGCTGACTATCAAGACCCATCTAC
CTACTTAGATACTCTAAATGTAAATAATGGCGCTAGCTTGCAAAACTTTGGTTTTGAGCCAGGCCAAGATATGGACAAGA
TGAAAGAGTTGGGCTTGGACACTTATACTAAGATGTTGGAAGAAGCAAATGCTGAAACAACAGATGTGAAAGTTCGCTAT
GAAAAATATGCGGATGCGCAAGCTTGGTTGCTTGACAGCGGAATTATCATGCCGACCATTTCAGGAGGTGGTAGTCCTTC
TGTAAGTAAGTCCAAACCTTTCAGTCGTGCCTATTCACTCGTTGGAATCAAGGGATCTGGCTTCAACTTTAAATACACAA
AACTCAGAAGTGAAATTGTAACGACCAAAGAATATGAAGAAGCTAAGAAGAAATGGCAAGAAAAAACGTTGGAATCTAAC
AAAAAAGCCCAAGAAGAACTAGCAGATCATATTGAAAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.573

100

0.547
  amiA3 Streptococcus thermophilus LMD-9

53.881

100

0.541
  amiA3 Streptococcus thermophilus LMG 18311

53.729

100

0.54

Multiple sequence alignment