Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM67_RS01800 Genome accession   NZ_LS483383
Coordinates   328623..329354 (+) Length   243 a.a.
NCBI ID   WP_005591084.1    Uniprot ID   A0AAV3EDI1
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 323623..334354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS01780 (NCTC12479_00337) comA 324236..326389 (+) 2154 WP_005591091.1 peptide cleavage/export ABC transporter ComA Regulator
  DQM67_RS01785 (NCTC12479_00338) comB 326404..327759 (+) 1356 WP_005591090.1 bacteriocin secretion accessory protein Regulator
  DQM67_RS01790 (NCTC12479_00339) - 327860..328135 (-) 276 WP_005591088.1 hypothetical protein -
  DQM67_RS01795 (NCTC12479_00340) - 328145..328555 (-) 411 WP_005591086.1 HIT family protein -
  DQM67_RS01800 (NCTC12479_00341) pptA 328623..329354 (+) 732 WP_005591084.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS01805 (NCTC12479_00342) - 329351..330397 (+) 1047 WP_005591082.1 ABC transporter permease -
  DQM67_RS01810 (NCTC12479_00343) ccrZ 330448..331242 (+) 795 WP_005591081.1 cell cycle regulator CcrZ -
  DQM67_RS01815 (NCTC12479_00344) trmB 331239..331877 (+) 639 WP_005591080.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27081.58 Da        Isoelectric Point: 4.7393

>NTDB_id=1139489 DQM67_RS01800 WP_005591084.1 328623..329354(+) (pptA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MLEIKELTGGYVNIPVLKDVSFEVGDGQLVGLIGLNGAGKSTTINEIIGLLTPYKGEIRIDGLQLGKNPSAYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDIEQEVAFERVERLLTIFRLKDKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIQLLDEEKKKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGNLAELRGEFQMPDASLNDIYLALTEE
AAL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1139489 DQM67_RS01800 WP_005591084.1 328623..329354(+) (pptA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGTTAGAAATCAAAGAGCTTACGGGCGGCTATGTAAATATCCCGGTTTTAAAGGATGTCAGCTTTGAAGTGGGCGATGG
TCAGCTGGTCGGTTTAATTGGTCTCAATGGTGCTGGTAAATCCACTACCATCAATGAAATTATCGGTTTATTGACACCTT
ACAAGGGAGAAATTCGGATTGATGGTTTGCAGCTGGGAAAAAATCCTAGCGCTTACCGTAAGAAGATTGGCTTTATCCCA
GAGACACCGAGCCTTTATGAGGAGTTGACCCTGCGTGAGCATATTGAAACGGTTGCCATGGCTTACGATATTGAGCAGGA
AGTCGCTTTTGAGCGCGTGGAGCGCCTCTTAACTATCTTCCGACTCAAGGATAAGTTGGACTGGTTTCCAGTGCATTTCT
CTAAGGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTCGTGGTAGATCCTAGTCTTTTTATCGTGGATGAGCCTTTT
CTGGGGCTGGATCCGGTAGCTATTGCAGACCTTATCCAGCTCTTGGATGAGGAAAAGAAAAAAGGTAAGTCCATCCTCAT
GAGTACCCATGTTTTGGACTCAGCTGAGAAGATGTGTGATAGCTTTGTGATTTTGCATAAAGGGCAGGTGCGCGCCAAAG
GCAATCTAGCTGAGTTGCGAGGAGAATTTCAGATGCCGGACGCTAGTCTCAATGACATCTATCTGGCCTTGACGGAAGAG
GCTGCGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

98.354

0.716
  pptA Streptococcus thermophilus LMD-9

71.967

98.354

0.708

Multiple sequence alignment