Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CBS_RS26080 Genome accession   NZ_CP006777
Coordinates   5982284..5982733 (-) Length   149 a.a.
NCBI ID   WP_012061234.1    Uniprot ID   A0A0B5QVQ9
Organism   Clostridium beijerinckii ATCC 35702 strain SA-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5977284..5987733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBS_RS26060 (Cbs_5081) rplI 5979090..5979536 (-) 447 WP_012061230.1 50S ribosomal protein L9 -
  CBS_RS26065 (Cbs_5082) - 5979540..5981480 (-) 1941 WP_012061231.1 DHH family phosphoesterase -
  CBS_RS26070 (Cbs_5083) - 5981501..5981821 (-) 321 WP_012061232.1 MazG-like family protein -
  CBS_RS26075 (Cbs_5084) rpsR 5981999..5982259 (-) 261 WP_012061233.1 30S ribosomal protein S18 -
  CBS_RS26080 (Cbs_5085) ssbA 5982284..5982733 (-) 450 WP_012061234.1 single-stranded DNA-binding protein Machinery gene
  CBS_RS26085 (Cbs_5086) rpsF 5982747..5983034 (-) 288 WP_012061235.1 30S ribosomal protein S6 -
  CBS_RS26090 (Cbs_5087) - 5983136..5983330 (-) 195 WP_012061236.1 DUF951 domain-containing protein -
  CBS_RS26095 (Cbs_5088) - 5983330..5984253 (-) 924 WP_012061237.1 mechanosensitive ion channel family protein -
  CBS_RS26100 (Cbs_5089) - 5984269..5984511 (-) 243 WP_012061238.1 DUF3343 domain-containing protein -
  CBS_RS26105 (Cbs_5090) - 5984680..5985327 (+) 648 WP_012061239.1 LysE family translocator -
  CBS_RS26110 (Cbs_5091) - 5985343..5986494 (+) 1152 WP_012061240.1 aminotransferase class V-fold PLP-dependent enzyme -
  CBS_RS26115 (Cbs_5092) yyaC 5986661..5987248 (+) 588 WP_012061241.1 spore protease YyaC -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15891.51 Da        Isoelectric Point: 4.5778

>NTDB_id=113948 CBS_RS26080 WP_012061234.1 5982284..5982733(-) (ssbA) [Clostridium beijerinckii ATCC 35702 strain SA-1]
MNKVVLIGRLTKDPELRFTPGSGAAVTTLTLAVDKYNTKTGQREADFVPVVVWGKQAESTANYMSKGSQVAISGRIQTRS
YDAKDGTKRYVTEVVADQFGGVEFLGSKGSNSSGNSFGNSNEYSAPANDAFSGGFEEDITPVDDGDMPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=113948 CBS_RS26080 WP_012061234.1 5982284..5982733(-) (ssbA) [Clostridium beijerinckii ATCC 35702 strain SA-1]
ATGAATAAAGTAGTTCTAATCGGAAGATTAACAAAAGATCCAGAACTAAGATTTACTCCAGGAAGTGGAGCAGCAGTAAC
AACCTTAACATTAGCAGTTGATAAATATAATACAAAAACTGGCCAAAGAGAAGCAGATTTTGTTCCTGTAGTAGTATGGG
GCAAACAAGCTGAGAGTACTGCTAATTACATGAGTAAAGGTAGCCAAGTGGCTATTAGTGGTAGAATCCAAACCAGAAGT
TATGATGCGAAAGACGGAACTAAGAGATATGTTACGGAAGTTGTAGCAGATCAATTTGGTGGAGTTGAATTCCTAGGAAG
TAAAGGAAGCAATTCATCAGGAAATAGTTTTGGTAATAGCAATGAATATTCAGCACCAGCGAATGATGCATTCAGTGGTG
GATTTGAAGAGGATATAACTCCGGTAGATGACGGAGATATGCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5QVQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.143

100

0.483
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.778

72.483

0.383
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

69.128

0.369

Multiple sequence alignment