Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DQM69_RS09090 Genome accession   NZ_LS483381
Coordinates   1868563..1869609 (-) Length   348 a.a.
NCBI ID   WP_109982757.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1863563..1874609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS09065 (NCTC10921_01808) rimP 1863639..1864115 (-) 477 WP_080566217.1 ribosome maturation factor RimP -
  DQM69_RS09070 (NCTC10921_01809) - 1864586..1866076 (-) 1491 WP_021673843.1 cell wall-binding repeat protein -
  DQM69_RS09080 (NCTC10921_01811) trmB 1866790..1867425 (-) 636 WP_019769137.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM69_RS09085 (NCTC10921_01812) ccrZ 1867426..1868232 (-) 807 WP_019770722.1 cell cycle regulator CcrZ -
  DQM69_RS09090 (NCTC10921_01813) pptB 1868563..1869609 (-) 1047 WP_109982757.1 ABC transporter permease Regulator
  DQM69_RS09095 (NCTC10921_01814) pptA 1869612..1870337 (-) 726 WP_002960055.1 ABC transporter ATP-binding protein Regulator
  DQM69_RS09100 (NCTC10921_01815) - 1870615..1871034 (+) 420 WP_002960053.1 HIT family protein -
  DQM69_RS09105 (NCTC10921_01816) - 1871031..1871321 (+) 291 WP_002960051.1 hypothetical protein -
  DQM69_RS09110 (NCTC10921_01817) brpA 1871508..1872743 (-) 1236 WP_002960048.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM69_RS09115 (NCTC10921_01818) - 1872752..1873264 (-) 513 WP_002960047.1 GNAT family N-acetyltransferase -
  DQM69_RS09120 (NCTC10921_01819) tsaE 1873257..1873697 (-) 441 WP_002960046.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 39882.22 Da        Isoelectric Point: 10.5997

>NTDB_id=1139415 DQM69_RS09090 WP_109982757.1 1868563..1869609(-) (pptB) [Streptococcus sobrinus strain NCTC10921]
MKAVFAKRRFDFNQQCLKYLRYVLNDHFVLVLVFLLGFVLYQYSNLLRHFPKNHWPIMAGLMLVSLVLLWLGRVATYLEP
ADRVFLLPQEDDLIAQIKGARWRSFLVWGGLQTLFLLALAPLFLALGFSKLGFLVFLLFMLLVKGGLVLFKSRKLLIAGN
LNWEEALAQEQGRKQAILKFYSLFTNVKGISSQTKRRGYLDFLLAGLTKKQSQLWSNLYLRAYLRSGDYLALSLRLLFLS
LLSFILVKAGLVALALALLFDYLLLFQLLSLAKHYDYQYLTQLFPLGAGLKKANLKQVLRGILYGLVLLQAIVLLIFAFS
WQNLALLVGVALLLVELYLPYKLKKLFA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1139415 DQM69_RS09090 WP_109982757.1 1868563..1869609(-) (pptB) [Streptococcus sobrinus strain NCTC10921]
ATGAAAGCAGTATTTGCCAAACGTCGCTTTGATTTCAATCAGCAGTGTCTCAAGTATCTTCGCTATGTTCTCAATGACCA
TTTCGTTTTGGTCTTGGTTTTCCTTTTGGGCTTTGTTCTTTATCAGTACAGCAATTTGCTTCGGCATTTTCCTAAAAATC
ATTGGCCAATTATGGCAGGGCTAATGCTGGTCAGTTTGGTCCTGCTCTGGTTGGGGCGGGTGGCAACCTATCTGGAACCC
GCTGACCGAGTCTTTCTCCTACCCCAGGAAGATGACTTAATCGCCCAAATCAAGGGGGCTAGGTGGCGGAGTTTTCTGGT
TTGGGGAGGCCTGCAAACCCTCTTCTTGTTGGCCCTAGCTCCCCTCTTTTTAGCCCTAGGATTTTCAAAATTAGGATTTT
TAGTCTTTCTACTTTTCATGCTGCTTGTCAAAGGCGGTCTGGTTCTTTTTAAAAGTCGCAAGCTTCTTATCGCTGGTAAT
CTAAATTGGGAAGAGGCTCTGGCCCAAGAACAAGGGCGAAAACAAGCTATCCTGAAATTTTATTCCCTCTTTACCAATGT
TAAGGGCATTTCCAGCCAAACCAAACGACGGGGCTATCTGGATTTTCTCCTGGCTGGTCTGACCAAGAAGCAGTCCCAGC
TTTGGTCCAATCTCTACCTACGGGCCTATTTACGCAGTGGTGATTATCTGGCCTTGAGCCTGAGACTTCTCTTTCTTAGC
CTGCTCAGCTTTATCCTTGTCAAGGCCGGCCTAGTCGCGCTGGCCCTGGCCCTGCTCTTTGATTATCTCCTGCTCTTTCA
ACTTCTGTCTCTGGCCAAGCATTACGATTATCAATATTTAACCCAGCTCTTTCCCTTGGGAGCTGGTCTGAAAAAGGCCA
ACCTCAAGCAGGTTCTACGAGGGATTCTCTATGGCCTGGTTCTGCTACAAGCAATCGTCCTACTCATTTTTGCCTTCTCT
TGGCAAAATCTGGCCCTGCTGGTAGGTGTCGCTCTCCTCTTGGTGGAGCTTTACCTGCCCTATAAGTTAAAGAAGTTGTT
TGCTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.555

99.425

0.483

  pptB Streptococcus salivarius strain HSISS4

48.555

99.425

0.483


Multiple sequence alignment