Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM69_RS09095 Genome accession   NZ_LS483381
Coordinates   1869612..1870337 (-) Length   241 a.a.
NCBI ID   WP_002960055.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864612..1875337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS09080 (NCTC10921_01811) trmB 1866790..1867425 (-) 636 WP_019769137.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM69_RS09085 (NCTC10921_01812) ccrZ 1867426..1868232 (-) 807 WP_019770722.1 cell cycle regulator CcrZ -
  DQM69_RS09090 (NCTC10921_01813) pptB 1868563..1869609 (-) 1047 WP_109982757.1 ABC transporter permease Regulator
  DQM69_RS09095 (NCTC10921_01814) pptA 1869612..1870337 (-) 726 WP_002960055.1 ABC transporter ATP-binding protein Regulator
  DQM69_RS09100 (NCTC10921_01815) - 1870615..1871034 (+) 420 WP_002960053.1 HIT family protein -
  DQM69_RS09105 (NCTC10921_01816) - 1871031..1871321 (+) 291 WP_002960051.1 hypothetical protein -
  DQM69_RS09110 (NCTC10921_01817) brpA 1871508..1872743 (-) 1236 WP_002960048.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM69_RS09115 (NCTC10921_01818) - 1872752..1873264 (-) 513 WP_002960047.1 GNAT family N-acetyltransferase -
  DQM69_RS09120 (NCTC10921_01819) tsaE 1873257..1873697 (-) 441 WP_002960046.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM69_RS09125 (NCTC10921_01820) - 1873871..1875289 (-) 1419 WP_002960044.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26757.23 Da        Isoelectric Point: 4.6733

>NTDB_id=1139416 DQM69_RS09095 WP_002960055.1 1869612..1870337(-) (pptA) [Streptococcus sobrinus strain NCTC10921]
MLKIDKMTGGYRNIPVLKEISFEVPDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGAITIDDLSLAQDKEAYRKKIGFIP
ETPSLYEELTLKEHLETVAMAYDIPTAEALDRAQKLLQLFRLEDKLDWFPVNFSKGMKQKVMIICAFIVQPRLLIVDEPF
LGLDPLAINDLMDLLEEEKAKGTAILMSTHVLDSAQKMCDSFVILHQGQIRAQGTLADLRASFGQADASLNDLYMALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1139416 DQM69_RS09095 WP_002960055.1 1869612..1870337(-) (pptA) [Streptococcus sobrinus strain NCTC10921]
ATGTTAAAAATAGACAAGATGACAGGAGGCTACCGCAATATTCCTGTCTTAAAAGAGATTTCCTTTGAGGTGCCCGACGG
TCAGCTGGTCGGTCTCATCGGTCTTAATGGGGCTGGGAAATCAACGACCATCAAGGAGATTATTGGGCTTCTAACTCCCT
ATCAGGGGGCTATTACTATTGATGACCTCAGCTTAGCTCAGGACAAGGAAGCCTACCGGAAGAAGATTGGCTTTATTCCA
GAAACGCCCAGCCTCTACGAGGAATTGACTCTGAAAGAGCATCTGGAAACCGTAGCCATGGCTTATGATATTCCGACGGC
TGAGGCCTTGGACCGAGCTCAAAAGCTTCTTCAACTTTTCCGCCTAGAGGATAAATTGGACTGGTTCCCTGTCAACTTTT
CTAAAGGCATGAAGCAGAAGGTTATGATTATCTGTGCCTTCATCGTCCAGCCTCGTCTTTTAATCGTTGATGAGCCTTTC
TTGGGTCTGGACCCCCTAGCCATCAATGATTTGATGGATCTCTTAGAAGAAGAAAAAGCCAAGGGAACCGCCATTCTCAT
GTCCACCCATGTCTTGGATTCGGCCCAAAAGATGTGTGATAGCTTTGTTATCCTCCATCAGGGGCAAATCAGGGCACAAG
GGACTCTGGCGGATTTGCGGGCCAGCTTTGGTCAGGCAGATGCCAGTCTCAATGACCTCTACATGGCTTTGACAAAAGAG
GTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment