Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM75_RS06925 Genome accession   NZ_LS483380
Coordinates   1460794..1461603 (-) Length   269 a.a.
NCBI ID   WP_111692627.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455794..1466603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS06915 (NCTC11824_01392) rnc 1457426..1458118 (-) 693 WP_038674782.1 ribonuclease III -
  DQM75_RS06920 (NCTC11824_01393) - 1458376..1459890 (-) 1515 WP_231199561.1 helix-turn-helix domain-containing protein -
  DQM75_RS06925 (NCTC11824_01394) vicX 1460794..1461603 (-) 810 WP_111692627.1 MBL fold metallo-hydrolase Regulator
  DQM75_RS06930 (NCTC11824_01395) vicK 1461607..1462959 (-) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM75_RS06935 (NCTC11824_01396) vicR 1462952..1463662 (-) 711 WP_012515994.1 response regulator YycF Regulator
  DQM75_RS06940 (NCTC11824_01397) - 1463869..1464888 (-) 1020 WP_111692929.1 DUF3114 domain-containing protein -
  DQM75_RS06945 (NCTC11824_01398) - 1464934..1466196 (-) 1263 WP_111692628.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29964.99 Da        Isoelectric Point: 5.5346

>NTDB_id=1139342 DQM75_RS06925 WP_111692627.1 1460794..1461603(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MSEVGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRRPEDLDAILITHEHSDHIKGVGIMARKYNLD
VYANEKTWQMIDERHMIGNLDVAQKHVFERGKTMTFGDIDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRLAG
IIENADGYLIESNHDVEILRAGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGNKTKKIYLGHLSQENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTASPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1139342 DQM75_RS06925 WP_111692627.1 1460794..1461603(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGAGTGAGGTTGGCTTTAAATATAGTATTTTAGCATCAGGATCGACAGGTAACTGCTTTTACTTGGAAACGCCCAAGAA
GCGGTTGTTGATTGATGCAGGACTGACTGGAAAGAAAATCACCAGTCTCCTTGCTGAGATTGACAGAAGGCCTGAGGATT
TGGATGCTATCTTGATTACCCACGAGCATTCCGACCATATCAAGGGTGTTGGAATCATGGCTCGAAAATATAACCTAGAT
GTCTATGCCAATGAAAAGACTTGGCAGATGATTGATGAGCGTCATATGATTGGCAACCTAGACGTCGCACAAAAGCATGT
CTTTGAAAGAGGTAAGACCATGACCTTTGGAGACATTGACATTGAGAGCTTTGGTGTTAGTCATGACGCTGTAGACCCAC
AGTTTTACCGCATTATGAAGGATAACAAGTCCTTTGTCATGCTGACAGATACAGGATATGTGAGTGACCGCTTGGCTGGG
ATCATTGAAAATGCTGACGGCTACTTGATTGAGTCAAATCACGATGTGGAGATATTGCGAGCCGGCTCTTATCCTTGGAG
CCTCAAGCAGCGAATCTTATCTGACCTAGGGCATTTATCCAATGAAGATGGTGCTGGCGCTATGATTCGAAGCTTGGGCA
ATAAAACAAAGAAAATCTACCTCGGTCACCTAAGCCAGGAGAACAATATCAAAGAATTAGCACACATGACAATGGTCAAT
CAGCTAGCAATGGCAGATTTAGGTGTTGGAACAGATTTTACTGTTCATGACACCTCACCAGATACCGCCAGTCCCTTGAC
AGACATCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.093

100

0.751

Multiple sequence alignment