Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   DQM97_RS08430 Genome accession   NZ_LS483378
Coordinates   1740335..1741336 (-) Length   333 a.a.
NCBI ID   WP_002962649.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC12279     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735335..1746336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM97_RS08410 (NCTC12279_01696) - 1736615..1737613 (-) 999 WP_002961203.1 glycosyltransferase -
  DQM97_RS08415 (NCTC12279_01697) - 1737693..1738166 (-) 474 WP_002961202.1 hypothetical protein -
  DQM97_RS08425 (NCTC12279_01698) - 1738395..1739855 (-) 1461 WP_002962651.1 alpha-amylase -
  DQM97_RS08430 (NCTC12279_01699) ccpA 1740335..1741336 (-) 1002 WP_002962649.1 catabolite control protein A Regulator
  DQM97_RS08435 (NCTC12279_01700) - 1741634..1743283 (-) 1650 WP_002962647.1 phosphoenolpyruvate carboxykinase (ATP) -
  DQM97_RS08440 (NCTC12279_01701) - 1743503..1744588 (+) 1086 WP_002962646.1 M24 family metallopeptidase -
  DQM97_RS08445 (NCTC12279_01702) - 1744662..1746203 (-) 1542 WP_002962644.1 ClC family H(+)/Cl(-) exchange transporter -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36458.42 Da        Isoelectric Point: 6.3624

>NTDB_id=1139238 DQM97_RS08430 WP_002962649.1 1740335..1741336(-) (ccpA) [Streptococcus sobrinus strain NCTC12279]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLGVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIASMYKYNIVLASSDENDDNEINVINTLFAKQVDGIIFMGHHLTDKVRLEFSRSRTPVVLAGTVDLDKQFPS
VNIDEEQAANDAVADLAQRHKKIAFVSGPLIDDINGKLRLTGYKTGLKNAGIKFQESLVFEANYSYEEGFALAKRVLNSG
ARAAYVGQDELAAGLLNGLFAAGKSVPDDFEIITGNDSPVVKYTRPNLTSISQPIYDLGAVSMRMLTKIMNKEELDEHDI
ILNHGINKRQSSL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1139238 DQM97_RS08430 WP_002962649.1 1740335..1741336(-) (ccpA) [Streptococcus sobrinus strain NCTC12279]
ATGAATACTGATGATACCATTACCATTTATGATGTAGCGCGTGAAGCTGGTGTTTCTATGGCGACTGTCAGCCGAGTTGT
TAATGGAAATAAAAATGTCAAAGAAAATACCCGTAAGAAAGTTCTTGGGGTGATTGATCGGCTGGACTATCGTCCTAATG
CAGTTGCCCGTGGTCTGGCCAGTAAGAAGACCACCACGGTGGGGGTTGTCATTCCTAATATTGCTAACAGCTATTTTTCA
ATTCTGGCTAAGGGGATTGACGATATTGCTTCCATGTACAAATATAATATTGTCCTTGCCTCTAGCGATGAGAATGATGA
TAATGAAATCAACGTTATCAACACCCTTTTTGCCAAGCAGGTAGATGGCATTATTTTTATGGGGCACCATCTGACCGATA
AGGTTCGTCTGGAATTTTCCCGCTCCCGTACACCCGTTGTTTTAGCAGGGACTGTTGATCTTGATAAGCAATTTCCAAGT
GTTAACATTGATGAGGAACAGGCTGCCAATGATGCGGTTGCGGATTTGGCTCAGCGCCACAAGAAAATTGCTTTTGTGTC
AGGCCCCTTGATTGATGATATCAATGGTAAGCTTCGCCTGACGGGTTATAAGACTGGCCTAAAAAATGCAGGCATTAAAT
TCCAAGAGAGTCTGGTTTTTGAAGCCAATTATTCTTATGAGGAGGGCTTTGCTTTGGCTAAGCGAGTTCTCAATTCTGGA
GCAAGAGCAGCCTATGTTGGTCAGGATGAACTGGCTGCCGGTTTGCTTAATGGTCTCTTTGCCGCCGGTAAATCAGTTCC
AGATGATTTTGAAATTATCACTGGCAACGATTCCCCAGTCGTCAAATATACCCGTCCAAATCTGACTTCCATCAGCCAGC
CTATCTATGACTTAGGAGCTGTCAGCATGCGGATGTTGACTAAAATCATGAACAAGGAAGAATTGGACGAGCACGACATC
ATCCTCAATCACGGCATTAACAAACGCCAGTCTAGTCTCTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

73.795

99.7

0.736
  ccpA Streptococcus pneumoniae D39

72.892

99.7

0.727
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.061

99.099

0.556

Multiple sequence alignment