Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM54_RS03850 Genome accession   NZ_LS483375
Coordinates   778423..779226 (+) Length   267 a.a.
NCBI ID   WP_045634630.1    Uniprot ID   A0AB34SA49
Organism   Streptococcus gordonii strain NCTC3165     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 773423..784226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS03830 (NCTC3165_00758) - 775158..775520 (-) 363 WP_111723480.1 MerR family transcriptional regulator -
  DQM54_RS03835 (NCTC3165_00759) - 775598..775975 (+) 378 WP_002899930.1 carboxymuconolactone decarboxylase family protein -
  DQM54_RS03840 (NCTC3165_00760) micA 776375..777076 (+) 702 WP_008809004.1 response regulator YycF Regulator
  DQM54_RS03845 (NCTC3165_00761) micB 777069..778430 (+) 1362 WP_111723481.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM54_RS03850 (NCTC3165_00762) vicX 778423..779226 (+) 804 WP_045634630.1 MBL fold metallo-hydrolase Regulator
  DQM54_RS03855 (NCTC3165_00763) - 779261..779617 (+) 357 WP_008809001.1 YbaN family protein -
  DQM54_RS03860 (NCTC3165_00764) rnc 779860..780558 (+) 699 WP_061601751.1 ribonuclease III -
  DQM54_RS03865 (NCTC3165_00765) smc 780549..784082 (+) 3534 WP_111723482.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29688.67 Da        Isoelectric Point: 6.1195

>NTDB_id=1139116 DQM54_RS03850 WP_045634630.1 778423..779226(+) (vicX) [Streptococcus gordonii strain NCTC3165]
MTKEGFKYSILASGSSGNCFYLETAKKKILVDAGLSGKKITSLLSEINRKPEDLDAILVTHEHKDHIHGVGVLARKYNLD
IYANEDTWKAMDSALGKIDISQKHIFEMGKVMTFGDIDIESFGVSHDAAAPQFYRFMKDDKSFVMLTDTGYVSDRMAGVV
ENADGYLIESNHDVEILRSGAYPWSLKQRILSDKGHLSNEDGADTMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLAVNHDFQVLDTSPDTATPLTSI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1139116 DQM54_RS03850 WP_045634630.1 778423..779226(+) (vicX) [Streptococcus gordonii strain NCTC3165]
ATGACTAAGGAAGGTTTTAAGTATAGCATTTTAGCATCTGGATCCAGTGGTAATTGTTTTTATTTAGAAACAGCCAAAAA
GAAGATTTTGGTGGATGCGGGACTATCTGGTAAAAAAATCACTAGTCTCCTAAGTGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATTTTAGTAACTCATGAACATAAGGATCACATTCATGGTGTTGGGGTCTTAGCCCGCAAGTATAATTTAGAT
ATCTATGCTAATGAAGATACTTGGAAAGCTATGGATAGTGCCTTAGGGAAAATTGATATCAGCCAAAAGCATATTTTTGA
AATGGGTAAGGTTATGACTTTTGGTGATATAGATATTGAAAGTTTTGGTGTTAGCCATGATGCGGCGGCACCACAATTTT
ATCGGTTTATGAAAGACGATAAAAGTTTTGTTATGCTGACGGATACGGGCTATGTGAGTGATCGTATGGCTGGAGTAGTT
GAAAATGCTGATGGTTACTTGATTGAGAGTAATCATGATGTAGAAATTTTGCGTAGTGGAGCTTACCCTTGGAGTCTTAA
GCAACGTATTTTATCCGATAAAGGCCACTTATCTAATGAAGATGGTGCTGATACGATGATTCGAACCTTGGGGAACCGTA
CCAAAAAGATTTATCTAGGTCACTTGAGTAAGGAGAATAATATCAAGGAGCTTGCTCATATGACTATGGTTAATCAGCTG
GCTCAAGCTGACTTGGCAGTCAATCATGACTTTCAAGTTTTGGATACTTCGCCAGATACAGCTACGCCTCTGACATCAAT
TTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

80.15

100

0.802

Multiple sequence alignment