Detailed information NTG1138999

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: DQO01_RS18345
• Genome accession: NZ_LS483372
• Coordinates: 3980428..3982653 (-)
• Length: 741 a.a.
• NCBI ID: WP_081006383.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain NCTC10038
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3975428..3987653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQO01_RS18310 (NCTC10038_03707)	murB	3975798..3976817 (-)	1020	WP_053256794.1	UDP-N-acetylmuramate dehydrogenase	-
DQO01_RS18315 (NCTC10038_03708)	-	3976814..3977278 (-)	465	WP_053256795.1	low molecular weight protein-tyrosine-phosphatase	-
DQO01_RS18320 (NCTC10038_03709)	kdsB	3977278..3978042 (-)	765	WP_053256796.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DQO01_RS18325 (NCTC10038_03710)	-	3978039..3978224 (-)	186	WP_003174668.1	Trm112 family protein	-
DQO01_RS18330 (NCTC10038_03711)	lpxK	3978248..3979258 (-)	1011	WP_053256797.1	tetraacyldisaccharide 4'-kinase	-
DQO01_RS18335 (NCTC10038_03712)	-	3979258..3979686 (-)	429	WP_053256798.1	ExbD/TolR family protein	-
DQO01_RS18340 (NCTC10038_03713)	exbB	3979683..3980318 (-)	636	WP_053256799.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
DQO01_RS18345 (NCTC10038_03714)	comA	3980428..3982653 (-)	2226	WP_081006383.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
DQO01_RS18350 (NCTC10038_03715)	-	3982789..3983310 (+)	522	WP_053256801.1	DUF2062 domain-containing protein	-
DQO01_RS18355 (NCTC10038_03716)	-	3983307..3984664 (-)	1358	Protein_3606	histidine kinase sensor domain-containing protein	-
DQO01_RS18360 (NCTC10038_03718)	-	3984651..3985379 (-)	729	WP_053256803.1	response regulator transcription factor	-
DQO01_RS18365 (NCTC10038_03720)	-	3985585..3987619 (+)	2035	Protein_3608	response regulator	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 79988.79 Da
• Isoelectric Point: 10.9627

>NTDB_id=1138999 DQO01_RS18345 WP_081006383.1 3980428..3982653(-) (comA) [Pseudomonas fluorescens strain NCTC10038]
MRTGMFALGLGLLTLRFLPALPPTAWLLAMFVLALMLLPFRTYPLAFFLLGLGWACISAQWALNDRLQPALDGQTRWVEG
RVVGLPQQTSTGVRFELADGRSRTARLPQRIRVSWQGGPPVNSGERWRLAITLKRPAGLLNFHGFDYEAWLLAQRMGATG
SVKDGQRLAPARNAWRDSVRQRLKAVDAQGREAGLAALVLGDGSGLATADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRALPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALDGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWRIWQAWTRPQGLIAIGLFPVLLVQGLPISLSAPVANLFAVPWISLVVLPLAL
LGTLLMAVPWVGEGLLWLAGGALDGLFRGLTLLAGLRSAWVPAEVPVGYWLLSAVGAVLLLLPKGVPFRLLGWPMLMVAI
FPPRALVPHGQVEVLQLDVGQGQAVILRTRHHTMLYDAGPRSGAADLGARVVLPALQKLGVGALDLMVISHAHADHAGGA
TAVARALAVGRVVGGESAGLPAFLDTQPCISGEQWEWDGVSFELWQWSGATSPNPKSCVLRVQAQGERLLLTGDIDQAAE
RAFLTSPLAVPTDWLQAPHHGSRSSSSWPLLQRLAPSSVLISRGRGNAFGHPHPQVMERYQALGSQVYDSAERGAVRLQL
GTFQAPVVARSQRRFWREALP

Nucleotide

• Length: 2226 bp

>NTDB_id=1138999 DQO01_RS18345 WP_081006383.1 3980428..3982653(-) (comA) [Pseudomonas fluorescens strain NCTC10038]
ATGAGAACAGGCATGTTCGCGCTCGGACTTGGATTGCTTACGCTGCGATTTCTACCGGCACTGCCGCCCACCGCATGGCT
GCTGGCCATGTTCGTGCTGGCGTTGATGCTGTTGCCGTTTCGCACCTACCCGCTGGCGTTCTTCCTGCTGGGGTTGGGTT
GGGCCTGCATCAGCGCGCAATGGGCGTTGAATGATCGGCTCCAGCCGGCACTGGACGGGCAGACGCGGTGGGTAGAGGGC
CGTGTGGTTGGGTTGCCACAGCAAACGAGCACCGGCGTGCGCTTCGAATTGGCCGACGGCCGGTCGCGTACGGCTCGGTT
GCCCCAGCGTATCCGAGTGTCCTGGCAGGGTGGCCCGCCGGTAAACAGCGGCGAGCGCTGGCGGCTGGCGATCACCTTGA
AACGGCCCGCGGGGCTGCTTAATTTTCATGGCTTTGACTATGAGGCCTGGTTGCTCGCCCAGCGTATGGGGGCCACCGGT
TCGGTGAAGGATGGCCAACGCCTGGCGCCGGCCCGCAATGCCTGGCGTGACAGCGTCCGGCAGCGCTTGAAAGCAGTTGA
TGCTCAAGGTCGCGAGGCGGGCTTGGCGGCGTTGGTGCTGGGCGATGGCTCGGGGCTGGCGACCGCGGATTGGCAGGTGT
TGCAAGACACCGGAACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTCGCGGGGTTGATCTACGGCCTG
GTAGCCGGGCTGGCACGCTACGGTTGCTGGCCCCGAGCCTTGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCGTTTACCGC
TGCGCTCGGTTACGGCCTGTTGGCGGGGTTCGGTGTACCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTATTGCTGT
GGCGTCTGCGTTTTCGGCATTTAGGCGTGTGGTGGCCGTTATTACTCGCCCTCGATGGCGTGCTGGTGCTGGAGCCGTTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTTGCAGCCGTGGCGGTGCTGGTTCTGGCGTTCAGCGGGCGCTTGGGCCC
GTGGCGCATCTGGCAGGCCTGGACGCGTCCCCAAGGGTTGATCGCCATCGGTTTGTTTCCGGTATTGCTGGTGCAGGGCT
TGCCCATCAGCCTCAGCGCGCCGGTTGCCAACCTGTTTGCCGTGCCGTGGATCAGCTTGGTGGTGTTGCCTCTGGCACTG
CTGGGGACCTTGCTTATGGCGGTGCCGTGGGTGGGCGAGGGCTTGTTGTGGTTGGCCGGTGGAGCGCTTGATGGTCTGTT
CAGGGGCTTGACGCTGTTGGCGGGGCTGCGCTCGGCCTGGGTGCCTGCCGAGGTGCCCGTGGGTTATTGGTTATTAAGCG
CTGTGGGCGCGGTGTTATTGCTATTGCCCAAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGTTGATGGTGGCAATC
TTTCCGCCGCGGGCACTGGTGCCGCATGGGCAGGTGGAGGTGCTGCAACTGGATGTCGGGCAGGGGCAAGCGGTGATCCT
GCGCACGCGCCATCACACAATGCTCTACGACGCAGGGCCGCGCTCCGGGGCGGCCGACCTCGGTGCGCGCGTGGTGTTGC
CGGCGCTGCAAAAACTGGGGGTAGGGGCGCTGGACCTCATGGTGATCAGCCACGCCCACGCTGACCATGCCGGCGGCGCC
ACCGCGGTTGCCCGTGCGCTTGCGGTCGGGCGGGTTGTCGGCGGAGAGTCCGCAGGGCTGCCGGCGTTTCTCGATACGCA
GCCTTGCATCAGTGGTGAGCAATGGGAGTGGGATGGCGTGTCGTTTGAGCTGTGGCAATGGTCAGGCGCCACGAGCCCTA
ATCCGAAATCCTGCGTGTTGCGCGTGCAAGCCCAGGGCGAACGCCTGCTGCTGACGGGGGATATCGATCAAGCCGCTGAA
AGGGCGTTCCTCACATCCCCGCTGGCGGTGCCGACGGATTGGCTGCAAGCGCCCCACCATGGCAGCCGCAGCTCCTCATC
CTGGCCTTTGCTGCAACGCCTTGCGCCCAGCTCGGTACTGATCTCACGCGGGCGTGGCAATGCATTTGGTCATCCCCACC
CACAGGTAATGGAGCGTTATCAAGCGTTGGGCAGCCAAGTCTACGACAGCGCGGAACGGGGGGCCGTGCGTCTGCAACTG
GGTACCTTCCAAGCACCGGTTGTTGCGCGTAGTCAACGTAGATTCTGGCGCGAGGCGTTACCGTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-665)

• Competence protein (Competence) (198-462)

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.388	97.031	0.576
comA	Ralstonia pseudosolanacearum GMI1000	34.591	100	0.371