Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DQO01_RS18340 Genome accession   NZ_LS483372
Coordinates   3979683..3980318 (-) Length   211 a.a.
NCBI ID   WP_053256799.1    Uniprot ID   A0A1T3AIR0
Organism   Pseudomonas fluorescens strain NCTC10038     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3974683..3985318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO01_RS18310 (NCTC10038_03707) murB 3975798..3976817 (-) 1020 WP_053256794.1 UDP-N-acetylmuramate dehydrogenase -
  DQO01_RS18315 (NCTC10038_03708) - 3976814..3977278 (-) 465 WP_053256795.1 low molecular weight protein-tyrosine-phosphatase -
  DQO01_RS18320 (NCTC10038_03709) kdsB 3977278..3978042 (-) 765 WP_053256796.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQO01_RS18325 (NCTC10038_03710) - 3978039..3978224 (-) 186 WP_003174668.1 Trm112 family protein -
  DQO01_RS18330 (NCTC10038_03711) lpxK 3978248..3979258 (-) 1011 WP_053256797.1 tetraacyldisaccharide 4'-kinase -
  DQO01_RS18335 (NCTC10038_03712) - 3979258..3979686 (-) 429 WP_053256798.1 ExbD/TolR family protein -
  DQO01_RS18340 (NCTC10038_03713) exbB 3979683..3980318 (-) 636 WP_053256799.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DQO01_RS18345 (NCTC10038_03714) comA 3980428..3982653 (-) 2226 WP_081006383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQO01_RS18350 (NCTC10038_03715) - 3982789..3983310 (+) 522 WP_053256801.1 DUF2062 domain-containing protein -
  DQO01_RS18355 (NCTC10038_03716) - 3983307..3984664 (-) 1358 Protein_3606 histidine kinase sensor domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8771

>NTDB_id=1138998 DQO01_RS18340 WP_053256799.1 3979683..3980318(-) (exbB) [Pseudomonas fluorescens strain NCTC10038]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1138998 DQO01_RS18340 WP_053256799.1 3979683..3980318(-) (exbB) [Pseudomonas fluorescens strain NCTC10038]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATATTGAGCTCCATCGCCGCCCTTGGCATCATTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGGATAACGCCTGAGCATCTGTTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTGGATAAAGAAAAGCTCAAGGAATTACGCGCCAACTCGCCTTTAGGTGAAATCCTCGCGGCCGGCCTTGCCAAC
TCCAAGCATGGTCGAGAGATCATGAAAGAGTGCATCGAGGAGGCCGCTGCCCGGGTCATCCATGAAATGGAGCGCTATAT
CAACGCGCTTGGCACCATTGCGGCCATGGCACCGTTGCTCGGCCTGTTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACTAACGCCGCCGTGCTGGCGGGCGGTATCTCCAAGGCGTTGATTACCACGGCT
GCGGGCCTGATGGTCGGCATCCCTTCGGTATTTTTCCACCGTTTCCTGCAACGTCGCATCGATGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTTGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T3AIR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment