Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DQN55_RS06055 Genome accession   NZ_LS483370
Coordinates   1252571..1254787 (+) Length   738 a.a.
NCBI ID   WP_074702869.1    Uniprot ID   -
Organism   Pseudomonas taetrolens strain NCTC10697     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247571..1259787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN55_RS06035 (NCTC10697_01218) - 1249402..1250025 (+) 624 WP_048377838.1 glutathione S-transferase family protein -
  DQN55_RS06040 (NCTC10697_01219) - 1250170..1251102 (+) 933 WP_048377837.1 ABC transporter ATP-binding protein -
  DQN55_RS06045 (NCTC10697_01220) - 1251099..1251878 (+) 780 WP_048377836.1 ABC transporter permease -
  DQN55_RS06050 (NCTC10697_01221) - 1251921..1252436 (-) 516 WP_048377835.1 DUF2062 domain-containing protein -
  DQN55_RS06055 (NCTC10697_01222) comA 1252571..1254787 (+) 2217 WP_074702869.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQN55_RS06060 (NCTC10697_01223) exbB 1254858..1255493 (+) 636 WP_048378438.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DQN55_RS06065 (NCTC10697_01224) - 1255490..1255918 (+) 429 WP_048377833.1 biopolymer transporter ExbD -
  DQN55_RS06070 (NCTC10697_01225) lpxK 1255918..1256928 (+) 1011 WP_048377832.1 tetraacyldisaccharide 4'-kinase -
  DQN55_RS06075 (NCTC10697_01226) - 1256954..1257139 (+) 186 WP_048377831.1 Trm112 family protein -
  DQN55_RS06080 (NCTC10697_01227) kdsB 1257136..1257900 (+) 765 WP_048377830.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQN55_RS06085 (NCTC10697_01228) murB 1257959..1258978 (+) 1020 WP_048377829.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80454.44 Da        Isoelectric Point: 10.4406

>NTDB_id=1138981 DQN55_RS06055 WP_074702869.1 1252571..1254787(+) (comA) [Pseudomonas taetrolens strain NCTC10697]
MHTGMLGLASGMIALRYLPVLPPVGWLLPMLCAGLFLLFWRRFAFGFFLLGLAWACFQGQRAIDDRLPAGLDGRTLWVEG
RVVGLAQHADAVVRFELQGARSRHATLPKTLRLSWYGGPRVNTGEHWRLAVTLKRPRGLLNPQGFDYEAWLLAQRIGATG
TVKDGQLLAPASHAWRDRLRQRLLRSDANGRAPWLAALVMGDGSGLSPEDWKVLQATGTVHLLVISGQHIGLFAGLIYGL
IALLARYGAWPRALPWLPWACGLAFAGALGYGVLAGFEVPVQRACVMLGLVLIWRLRFRHLGLWLPFLLALNAVLIIEPL
ASLRPGFWLSFTAVAVLIFTFGARLGPWNWQAAWVRPQVLISVGLFPVLWILALPISLSGPLANLVAVPWISLLVLPAAL
LGAVLMPVPWLGDGLLWVSGGLLDWLILGLTALAGYFSPWSPGSVPISVWALSAVGALIVLLPAGVVLRPLGWPLVLLAV
FMPRESVPLGQVEVMQLDVGQGLAFVLRTRHHTLLYDAGPKVRNLDQGERVVVPVLRSLGVQGLDLMLLSHADADHAGGA
LAVQRAFSVARVLSGDAAGLPAALQAHPCISGESWEWEGVKFSLWQWDGARDSNQKSCVLQVEANDERLLLTGDIDVQAE
RALLQSPLSVPTQWLQAPHHGSRTSSSMVFLKALSADTVLISRGHGNTFGHPHPQVMARYRALGMQVLDSAEQGAVWFRL
GAFDSARGLREQRRFWRG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1138981 DQN55_RS06055 WP_074702869.1 1252571..1254787(+) (comA) [Pseudomonas taetrolens strain NCTC10697]
ATGCATACAGGGATGTTGGGGCTGGCGTCAGGCATGATTGCCTTGCGTTATTTACCGGTATTGCCGCCGGTCGGTTGGTT
ACTGCCAATGCTGTGTGCGGGGTTATTCCTGTTGTTCTGGCGCAGGTTTGCCTTCGGTTTTTTTCTGCTGGGGTTGGCAT
GGGCCTGTTTTCAGGGGCAGCGAGCAATTGATGACCGCTTGCCCGCGGGGCTGGATGGTCGAACGCTGTGGGTGGAAGGG
CGCGTGGTCGGGCTGGCACAGCACGCTGATGCTGTCGTGCGTTTTGAATTGCAGGGCGCCAGGTCGCGCCACGCAACATT
ACCCAAAACCCTTCGACTGAGCTGGTACGGCGGGCCGCGGGTCAACACTGGCGAGCACTGGCGGCTGGCAGTCACGCTCA
AGCGGCCCAGAGGGTTGCTCAACCCGCAGGGTTTCGATTACGAAGCCTGGTTGTTGGCACAGCGCATCGGTGCTACCGGA
ACCGTTAAGGATGGCCAGTTACTGGCCCCGGCGAGTCATGCCTGGCGTGATCGTTTGCGCCAGCGTCTGTTACGCAGTGA
CGCCAATGGCCGGGCGCCCTGGCTGGCGGCCTTGGTCATGGGGGACGGTTCAGGCCTGAGTCCTGAGGACTGGAAAGTCC
TGCAAGCGACCGGGACCGTGCATTTGCTAGTGATTTCGGGGCAGCACATCGGGCTGTTTGCCGGGTTGATCTACGGGCTG
ATCGCTTTGCTGGCGCGGTACGGCGCATGGCCGCGTGCATTGCCCTGGCTGCCGTGGGCCTGTGGCCTGGCGTTTGCGGG
TGCCTTGGGGTATGGGGTGCTTGCAGGGTTCGAGGTGCCGGTTCAGCGGGCGTGCGTCATGCTTGGGCTGGTGCTGATAT
GGCGCCTGCGATTTCGCCATTTGGGCCTGTGGTTGCCGTTTCTGCTGGCGCTGAACGCAGTCTTGATCATTGAACCGCTG
GCGAGTTTGAGGCCGGGTTTCTGGTTGTCGTTTACTGCCGTGGCGGTATTGATCTTCACCTTTGGCGCACGCCTGGGGCC
CTGGAACTGGCAAGCCGCGTGGGTACGTCCTCAAGTTCTGATTTCCGTGGGGTTATTCCCAGTACTGTGGATACTCGCTT
TGCCCATCAGCCTGAGCGGGCCGCTGGCAAACCTGGTCGCCGTGCCCTGGATCAGCCTGCTGGTATTGCCTGCGGCGCTG
CTGGGCGCTGTGTTGATGCCGGTACCCTGGCTGGGCGATGGCCTGTTGTGGGTGTCCGGTGGCTTGCTTGACTGGCTGAT
ACTCGGCCTCACGGCATTGGCCGGGTATTTTTCGCCCTGGTCGCCGGGCTCGGTCCCCATCAGTGTCTGGGCGCTGAGTG
CGGTGGGCGCCCTTATAGTGTTGTTGCCTGCCGGGGTCGTGCTCCGGCCCTTGGGCTGGCCACTGGTGCTGCTGGCGGTG
TTCATGCCCCGTGAGTCCGTCCCCCTGGGTCAGGTCGAGGTGATGCAGCTGGATGTCGGGCAGGGTCTGGCGTTTGTGTT
GCGCACCCGGCATCACACGTTGCTGTATGACGCCGGTCCCAAGGTCAGAAACCTTGATCAAGGCGAGCGGGTCGTGGTGC
CGGTGCTGCGCTCACTGGGCGTTCAAGGTCTGGACCTGATGCTGCTGAGCCATGCCGACGCGGATCATGCGGGGGGCGCA
TTGGCCGTGCAGCGAGCGTTCAGCGTGGCGCGAGTGCTCAGTGGTGACGCCGCTGGCTTGCCTGCCGCCCTGCAGGCACA
TCCATGCATCAGCGGCGAAAGTTGGGAGTGGGAAGGTGTGAAGTTTTCACTCTGGCAATGGGACGGGGCCCGGGACAGCA
ATCAAAAATCGTGTGTGCTGCAGGTTGAAGCCAATGACGAGCGGTTACTGTTGACCGGTGACATCGACGTGCAGGCCGAG
CGGGCCTTGCTGCAAAGCCCTTTGAGTGTCCCTACTCAGTGGCTGCAAGCACCGCACCATGGCAGTCGTACATCTTCGTC
CATGGTGTTTCTCAAGGCGCTGTCTGCCGATACCGTGTTGATCTCCCGCGGTCACGGGAATACCTTTGGACACCCGCATC
CACAAGTGATGGCGCGCTATCGGGCGTTGGGCATGCAGGTTCTGGACAGTGCCGAGCAGGGCGCGGTGTGGTTTCGCCTG
GGGGCCTTCGACAGTGCCCGCGGGCTGCGTGAGCAGCGTCGTTTCTGGCGGGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.61

97.29

0.58
  comA Ralstonia pseudosolanacearum GMI1000

32.22

100

0.366

Multiple sequence alignment