Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DQN55_RS06060 Genome accession   NZ_LS483370
Coordinates   1254858..1255493 (+) Length   211 a.a.
NCBI ID   WP_048378438.1    Uniprot ID   -
Organism   Pseudomonas taetrolens strain NCTC10697     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249858..1260493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN55_RS06040 (NCTC10697_01219) - 1250170..1251102 (+) 933 WP_048377837.1 ABC transporter ATP-binding protein -
  DQN55_RS06045 (NCTC10697_01220) - 1251099..1251878 (+) 780 WP_048377836.1 ABC transporter permease -
  DQN55_RS06050 (NCTC10697_01221) - 1251921..1252436 (-) 516 WP_048377835.1 DUF2062 domain-containing protein -
  DQN55_RS06055 (NCTC10697_01222) comA 1252571..1254787 (+) 2217 WP_074702869.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQN55_RS06060 (NCTC10697_01223) exbB 1254858..1255493 (+) 636 WP_048378438.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DQN55_RS06065 (NCTC10697_01224) - 1255490..1255918 (+) 429 WP_048377833.1 biopolymer transporter ExbD -
  DQN55_RS06070 (NCTC10697_01225) lpxK 1255918..1256928 (+) 1011 WP_048377832.1 tetraacyldisaccharide 4'-kinase -
  DQN55_RS06075 (NCTC10697_01226) - 1256954..1257139 (+) 186 WP_048377831.1 Trm112 family protein -
  DQN55_RS06080 (NCTC10697_01227) kdsB 1257136..1257900 (+) 765 WP_048377830.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQN55_RS06085 (NCTC10697_01228) murB 1257959..1258978 (+) 1020 WP_048377829.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22870.05 Da        Isoelectric Point: 6.8759

>NTDB_id=1138982 DQN55_RS06060 WP_048378438.1 1254858..1255493(+) (exbB) [Pseudomonas taetrolens strain NCTC10697]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPAHLLGQVWVWIKDKQLDKDKLQQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTSNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1138982 DQN55_RS06060 WP_048378438.1 1254858..1255493(+) (exbB) [Pseudomonas taetrolens strain NCTC10697]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGTCTGTGGACCCTGCGTGCCAGTCGTGTGACGCCGGCGCACCTGCTCGGTCAGGTTTGGGTCTGGATCAAGGACA
AACAACTGGACAAGGACAAGCTCCAGCAGTTACGCGCCGACTCTCCGCTGGGCGAAATCCTGGCCGCTGGCCTGGCCAAT
TCCAGGCATGGCCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCACGTGTGATTCACGAGCTGGAGCGCTACCT
CAATGCACTGGGTACGATTGCAGCGATGGCGCCTTTGCTGGGCCTGCTCGGTACCGTGCTGGGCATGATCGATATCTTTA
GCTCGTTCATGGGTGCGGGCATGACCAGCAACGCAGCTGTCCTCGCGGGCGGGATCTCCAAGGCGCTGATTACGACTGCT
GCCGGTCTGATGGTCGGTATTCCGGCGGTGTTTTTCCATCGTTTCCTGCAACGTCGTGTCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGAAGTCGACATGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment