Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DQM57_RS07890 Genome accession   NZ_LS483369
Coordinates   1524595..1525293 (-) Length   232 a.a.
NCBI ID   WP_107863303.1    Uniprot ID   -
Organism   Neisseria cinerea strain NCTC10294     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519595..1530293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS07875 (NCTC10294_01495) - 1519959..1520954 (-) 996 WP_111727449.1 peptidylprolyl isomerase -
  DQM57_RS07880 (NCTC10294_01496) - 1521056..1523464 (-) 2409 WP_111727450.1 LPS-assembly protein LptD -
  DQM57_RS07885 (NCTC10294_01497) amgK 1523534..1524538 (+) 1005 WP_111727451.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DQM57_RS07890 (NCTC10294_01498) dsbA1 1524595..1525293 (-) 699 WP_107863303.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DQM57_RS07895 (NCTC10294_01499) murJ 1525497..1527035 (+) 1539 WP_002247315.1 murein biosynthesis integral membrane protein MurJ -
  DQM57_RS07900 (NCTC10294_01500) - 1527039..1527686 (+) 648 WP_111727452.1 phosphatase PAP2 family protein -
  DQM57_RS07905 (NCTC10294_01501) - 1527683..1528639 (+) 957 WP_111727453.1 YheT family hydrolase -
  DQM57_RS07910 (NCTC10294_01502) trpC 1528690..1529472 (+) 783 WP_111727454.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25290.88 Da        Isoelectric Point: 5.3538

>NTDB_id=1138962 DQM57_RS07890 WP_107863303.1 1524595..1525293(-) (dsbA1) [Neisseria cinerea strain NCTC10294]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLSNPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=1138962 DQM57_RS07890 WP_107863303.1 1524595..1525293(-) (dsbA1) [Neisseria cinerea strain NCTC10294]
ATGAAATCCAGACACCTTGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGTAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTT
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTCCTTGAGTTTTTCGGCTATTTCTGCCCGCACTGCGCCCAC
CTCGAGCCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAGCATGTCGTCTGGCAAAA
AGAGATGCTGCCGCTCGCCCGCCTTGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTTAATCAGAAAATTAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

98.276

100

0.983
  dsbA2 Neisseria meningitidis MC58

77.249

81.466

0.629

Multiple sequence alignment