Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DQM57_RS04730 Genome accession   NZ_LS483369
Coordinates   898866..899534 (-) Length   222 a.a.
NCBI ID   WP_108043581.1    Uniprot ID   -
Organism   Neisseria cinerea strain NCTC10294     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893866..904534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS04695 (NCTC10294_00898) dut 894589..895041 (-) 453 WP_003674996.1 dUTP diphosphatase -
  DQM57_RS04700 (NCTC10294_00899) - 895187..895897 (+) 711 WP_108043587.1 AzlC family ABC transporter permease -
  DQM57_RS04705 (NCTC10294_00900) - 895894..896202 (+) 309 WP_108043586.1 AzlD family protein -
  DQM57_RS04710 (NCTC10294_00901) pilX 896269..896748 (-) 480 WP_197711733.1 PilX family type IV pilin Machinery gene
  DQM57_RS04715 (NCTC10294_00902) pilK 896757..897332 (-) 576 WP_111727130.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DQM57_RS04720 (NCTC10294_00903) pilJ 897311..898237 (-) 927 WP_108043583.1 PilW family protein Machinery gene
  DQM57_RS04725 (NCTC10294_00904) pilV 898234..898842 (-) 609 WP_167395535.1 type IV pilus modification protein PilV Machinery gene
  DQM57_RS04730 (NCTC10294_00905) pilH 898866..899534 (-) 669 WP_108043581.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DQM57_RS04735 (NCTC10294_00906) dnaB 899691..901097 (-) 1407 WP_111727132.1 replicative DNA helicase -
  DQM57_RS04745 (NCTC10294_00907) - 901261..901842 (+) 582 WP_003777725.1 superoxide dismutase -
  DQM57_RS04750 (NCTC10294_00908) - 901955..902290 (-) 336 WP_111727134.1 general secretion pathway protein GspG -
  DQM57_RS04755 (NCTC10294_00909) cysT 902476..903312 (+) 837 WP_111727136.1 sulfate ABC transporter permease subunit CysT -
  DQM57_RS04760 (NCTC10294_00910) cysW 903397..904257 (+) 861 WP_108043578.1 sulfate ABC transporter permease subunit CysW -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24955.58 Da        Isoelectric Point: 9.8051

>NTDB_id=1138954 DQM57_RS04730 WP_108043581.1 898866..899534(-) (pilH) [Neisseria cinerea strain NCTC10294]
MYIRRQQGFTLIELLIVMVIATIMAMMAFPSMSQWIASRRVASQAEQIANLLRFSRGEAVRLNVPVYICPVQVKKDGTAN
NKCDFSKKEQGMLAFGDKNGDKAYGGDTKDVSIRSVVLNDDIKDKRINYTFNHVAFGKAKPATDRVVWTFNQNGTFGYTD
DQNLTSKSRFSYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDQRTMCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1138954 DQM57_RS04730 WP_108043581.1 898866..899534(-) (pilH) [Neisseria cinerea strain NCTC10294]
ATGTATATACGAAGACAACAAGGTTTCACGCTGATAGAGCTGCTCATTGTGATGGTTATTGCAACCATTATGGCAATGAT
GGCTTTCCCCAGTATGAGTCAATGGATTGCATCGCGTCGCGTTGCAAGTCAGGCGGAGCAGATTGCCAATCTCTTGCGTT
TTTCAAGGGGAGAGGCGGTTCGGCTCAATGTCCCTGTCTATATCTGTCCTGTTCAGGTTAAAAAAGACGGTACGGCCAAC
AATAAATGTGACTTCAGTAAGAAGGAGCAGGGAATGTTGGCTTTCGGCGATAAGAATGGCGATAAGGCATACGGAGGGGA
TACAAAAGATGTTTCCATCCGCAGTGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAACCATG
TCGCTTTCGGTAAAGCCAAGCCGGCTACAGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGGAC
GACCAGAATCTTACAAGCAAATCCAGATTTTCTTATTCCGACGGTTATATTCAAATTGTTCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCCGTAGTCTTGATTGACAGCAGTGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCAGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

76.018

99.55

0.757

Multiple sequence alignment