Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DQM57_RS04715 Genome accession   NZ_LS483369
Coordinates   896757..897332 (-) Length   191 a.a.
NCBI ID   WP_111727130.1    Uniprot ID   A0A7T3BN87
Organism   Neisseria cinerea strain NCTC10294     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 891757..902332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS04685 (NCTC10294_00896) yaaA 892389..893168 (-) 780 WP_108043589.1 peroxide stress protein YaaA -
  DQM57_RS04690 (NCTC10294_00897) dapC 893324..894511 (-) 1188 WP_108043588.1 succinyldiaminopimelate transaminase -
  DQM57_RS04695 (NCTC10294_00898) dut 894589..895041 (-) 453 WP_003674996.1 dUTP diphosphatase -
  DQM57_RS04700 (NCTC10294_00899) - 895187..895897 (+) 711 WP_108043587.1 AzlC family ABC transporter permease -
  DQM57_RS04705 (NCTC10294_00900) - 895894..896202 (+) 309 WP_108043586.1 AzlD family protein -
  DQM57_RS04710 (NCTC10294_00901) pilX 896269..896748 (-) 480 WP_197711733.1 PilX family type IV pilin Machinery gene
  DQM57_RS04715 (NCTC10294_00902) pilK 896757..897332 (-) 576 WP_111727130.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DQM57_RS04720 (NCTC10294_00903) pilJ 897311..898237 (-) 927 WP_108043583.1 PilW family protein Machinery gene
  DQM57_RS04725 (NCTC10294_00904) pilV 898234..898842 (-) 609 WP_167395535.1 type IV pilus modification protein PilV Machinery gene
  DQM57_RS04730 (NCTC10294_00905) pilH 898866..899534 (-) 669 WP_108043581.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DQM57_RS04735 (NCTC10294_00906) dnaB 899691..901097 (-) 1407 WP_111727132.1 replicative DNA helicase -
  DQM57_RS04745 (NCTC10294_00907) - 901261..901842 (+) 582 WP_003777725.1 superoxide dismutase -
  DQM57_RS04750 (NCTC10294_00908) - 901955..902290 (-) 336 WP_111727134.1 general secretion pathway protein GspG -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21257.42 Da        Isoelectric Point: 7.5665

>NTDB_id=1138951 DQM57_RS04715 WP_111727130.1 896757..897332(-) (pilK) [Neisseria cinerea strain NCTC10294]
MRKQNALMKVSLPCRQKGFALFIVLMVMIVVAFLVVIAAQSYNTEQRISANDSDRKLALTLAEAALRDGELHVLDLEEKE
VTFGENCTDGLCAAPDVRTTTDSKEKFGNITVEGNPKIEAWKRFCPNNSANLCIDQGKEYGKGVEGVSKMPRYIIEYLGV
ENSRNIYRVTAKAWGKNSNTVVILQSYVSNE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1138951 DQM57_RS04715 WP_111727130.1 896757..897332(-) (pilK) [Neisseria cinerea strain NCTC10294]
ATGCGCAAACAGAACGCTTTAATGAAAGTTTCACTCCCTTGCAGGCAGAAAGGGTTTGCACTGTTCATCGTTTTGATGGT
GATGATAGTAGTAGCTTTCCTGGTTGTTATTGCCGCCCAGTCTTACAATACCGAGCAAAGGATAAGTGCCAATGATTCGG
ACAGGAAATTGGCATTGACTTTAGCAGAAGCCGCGTTGAGGGATGGTGAGCTTCATGTTTTGGATTTAGAGGAGAAAGAA
GTTACATTCGGTGAGAATTGCACGGATGGGTTGTGCGCTGCTCCGGATGTACGGACGACTACCGATTCTAAGGAAAAATT
CGGTAATATTACGGTTGAAGGCAATCCTAAGATTGAAGCATGGAAGCGTTTTTGCCCTAATAATTCGGCAAACCTCTGTA
TCGACCAAGGAAAGGAATATGGAAAAGGGGTGGAGGGTGTCAGTAAGATGCCGCGTTACATTATCGAGTATCTGGGTGTA
GAAAATAGTCGGAATATTTACCGCGTTACCGCTAAGGCGTGGGGAAAAAACTCTAATACCGTAGTTATCCTTCAGTCTTA
TGTGAGTAATGAATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(89-188)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BN87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

68.342

100

0.712

Multiple sequence alignment