Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DQM57_RS02235 Genome accession   NZ_LS483369
Coordinates   410607..414221 (-) Length   1204 a.a.
NCBI ID   WP_111726579.1    Uniprot ID   A0A7T3BM70
Organism   Neisseria cinerea strain NCTC10294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 405607..419221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS02210 (NCTC10294_00425) - 405636..406853 (+) 1218 WP_111726573.1 heme biosynthesis protein HemY -
  DQM57_RS02215 (NCTC10294_00426) hemE 406933..407997 (+) 1065 WP_111726575.1 uroporphyrinogen decarboxylase -
  DQM57_RS09585 - 407985..408158 (-) 174 WP_167395514.1 hypothetical protein -
  DQM57_RS02220 (NCTC10294_00427) radA 408186..409565 (+) 1380 WP_101092834.1 DNA repair protein RadA Machinery gene
  DQM57_RS02225 (NCTC10294_00428) - 409670..410149 (-) 480 WP_111726577.1 DUF302 domain-containing protein -
  DQM57_RS02230 (NCTC10294_00429) - 410209..410568 (-) 360 WP_108043980.1 rhodanese-like domain-containing protein -
  DQM57_RS02235 (NCTC10294_00430) recB 410607..414221 (-) 3615 WP_111726579.1 exodeoxyribonuclease V subunit beta Machinery gene
  DQM57_RS02240 (NCTC10294_00431) - 414300..415205 (-) 906 WP_111726581.1 Dyp-type peroxidase -
  DQM57_RS02245 - 415257..415466 (-) 210 WP_111726583.1 hypothetical protein -
  DQM57_RS02250 (NCTC10294_00432) - 415576..416400 (+) 825 WP_167395516.1 amino acid ABC transporter substrate-binding protein -
  DQM57_RS02255 (NCTC10294_00433) - 416390..417106 (+) 717 WP_049336124.1 amino acid ABC transporter permease -
  DQM57_RS02260 (NCTC10294_00434) - 417116..417871 (+) 756 WP_111726586.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 135325.63 Da        Isoelectric Point: 5.5255

>NTDB_id=1138943 DQM57_RS02235 WP_111726579.1 410607..414221(-) (recB) [Neisseria cinerea strain NCTC10294]
MSASIQAFDPLAVPIAGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKKIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSNDPVLAELVFKRKAVPQTVLAQISRYLSRPYLNFRRPQADLKQAQHNAETS
WQTICRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFEELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAGNAQHRYTLATNYRSHSALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGRPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYDA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLADNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGSPQDSRETVRQTYDREKDGITMLKQNW
QRLTDNAPSGTNFAFTEDAPPPAVYCGNAGQTAEFAANSIPDRGFRLIRHTSFTALSRHTQTLDGGEEDVQPSLDPAETA
ESTMPSETPSDSDGMTIHNFPKGTHAGLCLHEILEHFPFDRPAAGQETLIADTLKKYGFEEIWLPAVAEMVEACRKTPLT
GTYSLSDIPPEYRCPEMGFTLFTEDFSLKRLRAWFARDDIRLPEVCRAAAKTLDFHTVNGFLNGFIDMVCQDPEGNICVI
DYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAAMRYFKLRGQQPAAISIRYLFLRGIDGKNGGIWRWDIDTASL
DWIR

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=1138943 DQM57_RS02235 WP_111726579.1 410607..414221(-) (recB) [Neisseria cinerea strain NCTC10294]
ATGTCTGCAAGCATCCAAGCATTTGACCCGCTGGCCGTCCCCATTGCCGGCACCAACCTGATTGAAGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATCGCCGCCCTGTTTACACGTTTGATCGTATTGGAACAAAAAAGCGTCGAACGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTGCAAGTTTTGGAA
AGCAAAAAAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATCGCCGCCTATTGTGCGGAACACCACAAAGGCGA
CACCTTCCTGCCCGCACTCTTGGAACAGGCTTTGCAAAAAGAAAGCCGGACGCGTCTGATTGTCCGCCTCAAAGCCGCCA
TCGGACAATTCGACAACGCCGCCATCTATACCATACACGGCTTCTGCCAACGTATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCTCAAGATTTTTGGCGGGAACG
CGTCAGCAACGACCCGGTGCTTGCCGAATTGGTTTTCAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATTTCGC
GCTATCTTTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCACAACGCCGAAACCTCA
TGGCAAACCATCTGCCGCCTGCTGCCCGAGCTAGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTGAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGACAGGCTCTTGAAACTTGCGTCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAATGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATATCTCAACCGCAGCCTTGCTGAGATGAAAAAATCGCGCCGCGAACGAGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGTGCAGATATTTACGCCTACCTGC
AAGCCGCCGGAAACGCGCAACACCGCTACACGCTCGCCACCAACTACCGCAGCCATTCTGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTTAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCCCCCGAACGTCCTGCAGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCCGTCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCTATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCTGCCGAAGACGCGCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTTGCCGACAACAACGGCGGCGACAACCGCGCCATCCGTTTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCCGAAGACGAACAGAAACAATACGCCGATGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTTGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCATACTCCACCAATACCGCCGACAACCCCCTCGCCTACCTGATTGAGGGCT
CGCCCCAAGACAGCCGCGAAACCGTCCGCCAAACCTATGACCGGGAAAAGGACGGCATAACGATGCTCAAACAAAACTGG
CAGCGTTTGACGGACAACGCCCCTTCCGGCACAAATTTTGCCTTCACAGAAGATGCGCCGCCTCCTGCCGTATATTGCGG
CAATGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATCCCCGATCGCGGATTCCGCCTCATCCGGCACACCAGCTTTA
CCGCATTAAGCCGCCATACCCAAACGCTTGACGGCGGGGAAGAAGATGTGCAGCCTTCCCTAGACCCTGCAGAAACGGCA
GAGTCAACCATGCCGTCTGAAACACCGTCGGATTCAGACGGCATGACGATACACAATTTTCCGAAAGGCACACATGCCGG
GCTGTGCCTGCACGAAATTCTGGAACACTTCCCATTCGACCGCCCTGCTGCCGGACAGGAAACACTCATTGCCGATACGC
TGAAGAAATACGGGTTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGTGGAAGCCTGCAGGAAAACGCCGCTGACG
GGAACATACAGCCTGTCCGACATTCCGCCCGAGTACCGCTGCCCCGAAATGGGCTTTACGCTCTTTACCGAAGACTTCAG
CCTCAAACGGCTGCGCGCATGGTTTGCCCGCGACGATATCCGATTGCCCGAAGTCTGCCGTGCCGCCGCCAAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGACATGGTTTGCCAAGACCCCGAGGGAAATATCTGCGTCATC
GACTACAAATCAAACCACCTCGGTACGGACGCATCCGCCTACACGCAACAGGCAATGGATGAAGCCGTCGCACACCACCA
CTATTACCTTCAGGCACTGATTTACGCCGTTGCCGCCATGCGGTACTTCAAACTGCGCGGACAACAGCCTGCCGCCATTT
CCATCCGCTACCTATTCCTGCGCGGCATAGACGGGAAAAACGGTGGAATTTGGCGTTGGGATATAGACACCGCCTCTTTA
GATTGGATAAGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-457)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1093-1181)

UvrD-like helicase C-terminal domain (UvrD_C)

(743-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BM70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

90.449

100

0.904

Multiple sequence alignment