Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM57_RS02220 Genome accession   NZ_LS483369
Coordinates   408186..409565 (+) Length   459 a.a.
NCBI ID   WP_101092834.1    Uniprot ID   -
Organism   Neisseria cinerea strain NCTC10294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 403186..414565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS02200 (NCTC10294_00423) - 403486..404208 (+) 723 WP_167395512.1 uroporphyrinogen-III synthase -
  DQM57_RS02205 (NCTC10294_00424) - 404275..405639 (+) 1365 WP_167395513.1 uroporphyrinogen-III C-methyltransferase -
  DQM57_RS02210 (NCTC10294_00425) - 405636..406853 (+) 1218 WP_111726573.1 heme biosynthesis protein HemY -
  DQM57_RS02215 (NCTC10294_00426) hemE 406933..407997 (+) 1065 WP_111726575.1 uroporphyrinogen decarboxylase -
  DQM57_RS09585 - 407985..408158 (-) 174 WP_167395514.1 hypothetical protein -
  DQM57_RS02220 (NCTC10294_00427) radA 408186..409565 (+) 1380 WP_101092834.1 DNA repair protein RadA Machinery gene
  DQM57_RS02225 (NCTC10294_00428) - 409670..410149 (-) 480 WP_111726577.1 DUF302 domain-containing protein -
  DQM57_RS02230 (NCTC10294_00429) - 410209..410568 (-) 360 WP_108043980.1 rhodanese-like domain-containing protein -
  DQM57_RS02235 (NCTC10294_00430) recB 410607..414221 (-) 3615 WP_111726579.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49559.07 Da        Isoelectric Point: 7.0604

>NTDB_id=1138942 DQM57_RS02220 WP_101092834.1 408186..409565(+) (radA) [Neisseria cinerea strain NCTC10294]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICREDRD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1138942 DQM57_RS02220 WP_101092834.1 408186..409565(+) (radA) [Neisseria cinerea strain NCTC10294]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTAGCCGCGCCCGAACCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ACACCTCGACCGTCCAGTCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGACGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAAGTCGCCT
TGCGCGCGCAACGTTTGGAACTGCCGACCGAAGGCGTAAACCTGCTTGCTGAAATCCGCATGGAAGCGATTCAAGCAGCG
TTGAAACAGCATCAGCCTGAAGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCAGG
CTCCGTGTCGCAGGTACGCGAATGCGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGTGTGCTGGAACACATGGTCGATACCGTGCTGTATTTTGAGGGC
GACCAACACTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCAGCAAACGAATTGGGCGTGTTCGCCAT
GACAGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACACAAGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACA
CCCAAACGACTCACCGTCGGTCTCGAACAAAACCGCCTCGCCATGTTGCTCGCCGTCCTCAACCGTCACGGCGGCATCGC
CTGTTTCGACCAAGACGTATTCCTTAACGCCGTCGGCGGCGTCAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCGTTGCCCGAAAAAATGGTCGCATTTGGCGAAATCGGTTTGAGCGGCGAA
GTCCGCCCCGTCGCGCGCGGACAAGAGCGGCTCAAAGAAGCAGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATTGATATTT
GTCGGGAAGATAGGGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus mitis SK321

47.45

98.257

0.466
  radA Streptococcus mitis NCTC 12261

47.45

98.257

0.466

Multiple sequence alignment