Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DQM57_RS01790 Genome accession   NZ_LS483369
Coordinates   337009..337812 (-) Length   267 a.a.
NCBI ID   WP_111726512.1    Uniprot ID   A0A7T3BN65
Organism   Neisseria cinerea strain NCTC10294     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332009..342812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS01770 (NCTC10294_00341) - 332197..332850 (+) 654 WP_111726508.1 DNA glycosylase -
  DQM57_RS01775 (NCTC10294_00342) - 332855..333253 (+) 399 WP_107859264.1 hypothetical protein -
  DQM57_RS01780 (NCTC10294_00343) trpB 333382..334584 (+) 1203 WP_111726510.1 tryptophan synthase subunit beta -
  DQM57_RS01785 (NCTC10294_00344) comA 334717..336936 (+) 2220 WP_167395582.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQM57_RS01790 (NCTC10294_00345) comL 337009..337812 (-) 804 WP_111726512.1 outer membrane protein assembly factor BamD Machinery gene
  DQM57_RS01795 (NCTC10294_00346) rluD 337811..338935 (+) 1125 WP_111726514.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DQM57_RS01800 (NCTC10294_00347) - 339088..340035 (-) 948 WP_111726516.1 bile acid:sodium symporter family protein -
  DQM57_RS09850 - 340139..340276 (-) 138 WP_197913451.1 hypothetical protein -
  DQM57_RS10050 - 340291..340545 (+) 255 Protein_335 hypothetical protein -
  DQM57_RS01810 (NCTC10294_00348) pgeF 340582..341361 (+) 780 WP_111726518.1 peptidoglycan editing factor PgeF -
  DQM57_RS01815 (NCTC10294_00349) lptE 341413..341892 (+) 480 WP_108043250.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30881.97 Da        Isoelectric Point: 9.1610

>NTDB_id=1138940 DQM57_RS01790 WP_111726512.1 337009..337812(-) (comL) [Neisseria cinerea strain NCTC10294]
MKKILLTVSLGLALSACATKGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHAQQSQLDTAY
AYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMIKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTHRV
LETNFPKSPFLKQPWRSDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1138940 DQM57_RS01790 WP_111726512.1 337009..337812(-) (comL) [Neisseria cinerea strain NCTC10294]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACCAAAGGTACGGTAGATAAAGATGC
CCAGATTACCCAAGACTGGAGTGTGGAAAAACTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGAG
CTGTCAAATTATACGAAATCTTGGAATCGCGCTTCCCTACCAGCCGCCATGCCCAGCAATCCCAACTGGATACGGCATAC
GCTTACTATAAAGATGATGAGAAGGATAAGGCGCTGGCCGCCATTGACCGCTTCCGCCGCCTTCACCCTCAACACCCGAA
TATGGACTACGCGCTATACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCTTTCTTGAACAAGCTAGCCTCGCAAG
ACTGGTCCGACCGCGACCCAAAAGCCAACCGCGAAGCGTATCAGGCCTTTGCGGAACTCGTCCAACGCTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGATCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTAGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCTGCCGACACACACCGCGTT
TTGGAAACCAACTTTCCGAAAAGCCCGTTCTTAAAGCAGCCGTGGCGGTCTGACGATATGCCCTGGTGGCGTTACTGGCA
CTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BN65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

98.502

100

0.985
  comL Neisseria gonorrhoeae MS11

95.506

100

0.955

Multiple sequence alignment