Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DQM57_RS01785 Genome accession   NZ_LS483369
Coordinates   334717..336936 (+) Length   739 a.a.
NCBI ID   WP_167395582.1    Uniprot ID   A0A7T3BKX9
Organism   Neisseria cinerea strain NCTC10294     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 329717..341936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS01760 (NCTC10294_00338) rsmA 330281..331066 (-) 786 WP_111726506.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DQM57_RS01765 - 331305..332207 (+) 903 Protein_326 DMT family transporter -
  DQM57_RS01770 (NCTC10294_00341) - 332197..332850 (+) 654 WP_111726508.1 DNA glycosylase -
  DQM57_RS01775 (NCTC10294_00342) - 332855..333253 (+) 399 WP_107859264.1 hypothetical protein -
  DQM57_RS01780 (NCTC10294_00343) trpB 333382..334584 (+) 1203 WP_111726510.1 tryptophan synthase subunit beta -
  DQM57_RS01785 (NCTC10294_00344) comA 334717..336936 (+) 2220 WP_167395582.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQM57_RS01790 (NCTC10294_00345) comL 337009..337812 (-) 804 WP_111726512.1 outer membrane protein assembly factor BamD Machinery gene
  DQM57_RS01795 (NCTC10294_00346) rluD 337811..338935 (+) 1125 WP_111726514.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DQM57_RS01800 (NCTC10294_00347) - 339088..340035 (-) 948 WP_111726516.1 bile acid:sodium symporter family protein -
  DQM57_RS09850 - 340139..340276 (-) 138 WP_197913451.1 hypothetical protein -
  DQM57_RS10050 - 340291..340545 (+) 255 Protein_335 hypothetical protein -
  DQM57_RS01810 (NCTC10294_00348) pgeF 340582..341361 (+) 780 WP_111726518.1 peptidoglycan editing factor PgeF -
  DQM57_RS01815 (NCTC10294_00349) lptE 341413..341892 (+) 480 WP_108043250.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80073.55 Da        Isoelectric Point: 9.9138

>NTDB_id=1138939 DQM57_RS01785 WP_167395582.1 334717..336936(+) (comA) [Neisseria cinerea strain NCTC10294]
MFRRWFLPCWVVGVAVSFALPVVPHWPFWLAAFAVFAVSARRFGFAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVP
LTVEVADMPSSDGRSVRFAAKAVDGKGRRFDLLLSDYKQREWTVGSKWRITARMRPVVGELNLRGLNREAWALSNGIGGV
GTVGADRVLLHDGSGWGIAVWRSRISRNWQQADTDGGLSDGIGLMRALSVGEQSALRPELWQAFRPLGLTHLVSISGLHV
TMVAVLFAWLVRRLFVCLPRLPSRPRVWILAGGCAGALCYALLAGFSVPTQRSVLMLAAFSWAWRNGRRSVWVAWWQALG
AVLLFDPLAVLGVGTWLSFGLVAALIWACSGRLGEGRRKTAVRGQWAASVLSVVLLGYLFASLPLISPLVNAVAILWFSW
VLTPLALLGSVVPFAPLQQAAAFLAEYTLRFLVWLAGVSPEFAVAAAPLPLLVLALCAALFVLLPRGLGLRPWSAAVLAG
FVFYRPEAVRGNSAEVIVWDAGQGLSVLVRTANHHLLFDTGTASAAQTGIVPSLNASGVRYLDRLVISHHDSDHDGGLQA
VRNIPDGGMYAGQPEFYEGARACTEQYWRWDGVDFEFLVPSERNESDDNGKSCVLRVTAGGAALLVTGDLDTKGEESLVG
KYGGNLYSQVLVLGHHGSNSSSSGVFLNTVAPEYAVSSSGYGNAYKHPTEAVQNRVRAHGIKLLRTDLSGALVFGLSQDG
VKAGRLKNYRFYWQRKPFE

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1138939 DQM57_RS01785 WP_167395582.1 334717..336936(+) (comA) [Neisseria cinerea strain NCTC10294]
GTGTTCCGTCGTTGGTTTTTGCCGTGTTGGGTCGTCGGCGTGGCAGTTTCGTTCGCACTGCCGGTTGTACCGCATTGGCC
GTTTTGGTTGGCAGCTTTTGCGGTTTTTGCTGTGTCTGCAAGGCGGTTTGGATTTGCCGGTTTGATGTTGTGTGTTTTGG
CGGGTGCTGCCTACGGTGTGTTCAGGACGGAGGCGGCATTGTCTTCCCAATGGCGGGCGGAGGCGGTTTCGGGTGTGCCG
TTAACGGTGGAAGTGGCAGATATGCCGAGTTCGGACGGGCGGAGCGTCCGTTTTGCGGCAAAGGCCGTAGACGGCAAGGG
ACGGCGGTTCGACTTGTTGCTGTCTGATTATAAGCAACGTGAGTGGACGGTCGGGAGCAAGTGGCGGATAACGGCGCGCA
TGCGCCCTGTCGTAGGGGAATTGAACCTTAGGGGGCTGAACCGTGAGGCGTGGGCATTATCCAACGGGATAGGCGGCGTG
GGGACGGTCGGTGCGGACAGGGTTTTGCTGCATGACGGAAGCGGTTGGGGGATTGCGGTTTGGCGCAGCCGGATCAGCCG
CAATTGGCAGCAGGCGGATACGGACGGCGGGCTTTCAGACGGCATCGGGCTGATGCGCGCGTTGAGTGTGGGCGAACAGT
CGGCATTGCGCCCCGAATTGTGGCAGGCGTTCCGACCGTTGGGGCTGACTCATCTGGTCAGTATCTCGGGTTTGCACGTT
ACGATGGTGGCGGTACTGTTTGCGTGGCTGGTCAGGCGGTTGTTTGTTTGTCTGCCGCGCCTTCCTTCCCGGCCGCGCGT
GTGGATTTTGGCAGGCGGTTGTGCCGGTGCGCTGTGTTACGCGCTACTTGCGGGTTTTTCCGTACCGACGCAGCGCAGCG
TTTTGATGTTGGCGGCATTCTCGTGGGCATGGCGTAATGGCAGGCGTTCGGTTTGGGTGGCATGGTGGCAGGCTTTGGGT
GCCGTTTTGTTGTTTGACCCTTTAGCGGTTTTAGGTGTCGGTACCTGGCTGTCTTTCGGTTTGGTCGCAGCTTTGATATG
GGCGTGTTCGGGGCGGCTGGGTGAAGGTAGGCGGAAAACCGCCGTGCGCGGACAGTGGGCGGCTTCGGTGTTGTCGGTGG
TTTTGCTGGGCTATCTGTTTGCCTCTCTGCCTTTAATCAGCCCTTTGGTCAATGCGGTGGCGATACTGTGGTTTTCGTGG
GTTCTGACGCCGCTGGCATTGCTGGGTTCGGTCGTGCCGTTTGCGCCGCTTCAGCAGGCGGCAGCATTCTTGGCGGAATA
CACTTTGCGGTTTTTGGTATGGCTTGCCGGCGTGTCGCCGGAGTTTGCCGTTGCTGCCGCACCTTTGCCGCTGTTGGTTT
TGGCATTATGCGCCGCCTTGTTTGTCCTTTTGCCGCGCGGTTTGGGTTTGCGTCCGTGGTCGGCGGCGGTTCTGGCTGGA
TTTGTGTTTTACCGTCCTGAGGCGGTACGTGGAAACAGTGCGGAAGTCATCGTTTGGGATGCGGGTCAGGGTTTGTCGGT
GCTGGTACGGACGGCAAATCATCATCTTTTGTTTGACACCGGAACTGCATCGGCGGCGCAGACGGGGATTGTGCCGAGCC
TGAATGCGTCGGGCGTACGGTATTTGGACAGGTTGGTGATTTCCCACCATGACAGCGATCATGATGGCGGTTTGCAGGCG
GTGAGGAATATTCCTGATGGCGGAATGTATGCTGGACAGCCGGAATTTTATGAGGGCGCGCGGGCCTGTACGGAGCAGTA
TTGGCGGTGGGACGGCGTGGATTTCGAGTTTTTGGTGCCGTCTGAACGCAATGAGTCGGACGACAACGGGAAAAGCTGTG
TACTCCGCGTAACGGCCGGCGGTGCGGCTTTGCTGGTAACCGGCGATTTGGATACGAAGGGTGAGGAAAGCCTGGTCGGC
AAGTATGGCGGCAACCTGTACAGCCAGGTGTTGGTGCTGGGGCATCACGGCAGTAATTCATCATCTTCAGGCGTGTTCCT
GAATACGGTTGCACCCGAATATGCTGTTTCATCCAGCGGTTATGGCAATGCCTACAAACATCCGACCGAGGCGGTGCAGA
ACCGTGTCCGTGCACACGGCATCAAGTTGTTGCGGACGGATTTGTCGGGTGCGCTGGTATTTGGTTTGAGTCAAGATGGT
GTGAAGGCAGGTCGTCTCAAAAATTATCGGTTTTATTGGCAGAGAAAGCCGTTTGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-668)

Competence protein (Competence)

(208-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BKX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

87.009

100

0.87

Multiple sequence alignment