Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM56_RS02050 Genome accession   NZ_LS483368
Coordinates   396775..397263 (+) Length   162 a.a.
NCBI ID   WP_038674547.1    Uniprot ID   A0A380JNM1
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 391775..402263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS02025 (NCTC6176_00404) - 392107..393168 (-) 1062 WP_111710304.1 LPXTG cell wall anchor domain-containing protein -
  DQM56_RS02035 (NCTC6176_00406) mutY 393942..395090 (-) 1149 WP_111710306.1 A/G-specific adenine glycosylase -
  DQM56_RS02040 - 395179..395404 (+) 226 Protein_361 HicB family protein -
  DQM56_RS02045 (NCTC6176_00407) rpsF 396466..396756 (+) 291 WP_012678504.1 30S ribosomal protein S6 -
  DQM56_RS02050 (NCTC6176_00408) ssbA 396775..397263 (+) 489 WP_038674547.1 single-stranded DNA-binding protein Machinery gene
  DQM56_RS02055 (NCTC6176_00409) rpsR 397422..397661 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQM56_RS02065 (NCTC6176_00412) - 399359..400009 (-) 651 WP_021320374.1 DUF1129 domain-containing protein -
  DQM56_RS02070 (NCTC6176_00413) - 400267..401211 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17822.66 Da        Isoelectric Point: 4.9008

>NTDB_id=1138884 DQM56_RS02050 WP_038674547.1 396775..397263(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1138884 DQM56_RS02050 WP_038674547.1 396775..397263(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377

Multiple sequence alignment