Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM52_RS01910 Genome accession   NZ_LS483367
Coordinates   343945..345924 (+) Length   659 a.a.
NCBI ID   WP_065361437.1    Uniprot ID   A0A9X8XIF8
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 338945..350924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM52_RS01890 (NCTC5371_00379) sufU 338988..339464 (+) 477 WP_003062583.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQM52_RS01895 (NCTC5371_00380) sufB 339457..340875 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  DQM52_RS01900 (NCTC5371_00381) - 341051..342232 (-) 1182 WP_012766577.1 serine hydrolase -
  DQM52_RS01905 (NCTC5371_00382) pbp3 342376..343614 (-) 1239 WP_111681532.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM52_RS01910 (NCTC5371_00383) amiA 343945..345924 (+) 1980 WP_065361437.1 peptide ABC transporter substrate-binding protein Regulator
  DQM52_RS01915 (NCTC5371_00384) amiC 345990..347492 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  DQM52_RS01920 (NCTC5371_00385) amiD 347492..348418 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  DQM52_RS01925 (NCTC5371_00386) amiE 348427..349497 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  DQM52_RS01930 (NCTC5371_00387) amiF 349490..350413 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72467.88 Da        Isoelectric Point: 5.0516

>NTDB_id=1138824 DQM52_RS01910 WP_065361437.1 343945..345924(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKAGQNKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGAFAWAGAKGPTSVYYYKGMRLQDKPVTAKQYEKAKEKWLK
AKAKSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1138824 DQM52_RS01910 WP_065361437.1 343945..345924(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAGTATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACATATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGCGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTACGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAATACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAGGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACCATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGCAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATCATTTCATCATGGTGGGGACCGGACTACCAAGA
TCCACGGACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGGTCAAA
ATAAGGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCATTGGG
TGGCACTCCTCGAGTTACTAAAGCCGTTCCATTTAGCGGTGCCTTTGCCTGGGCAGGTGCTAAAGGTCCTACTTCTGTAT
ATTATTATAAAGGAATGAGACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAA
GCAAAGGCTAAATCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.528

100

0.508
  amiA3 Streptococcus thermophilus LMG 18311

49.925

100

0.502
  amiA3 Streptococcus thermophilus LMD-9

49.623

100

0.499

Multiple sequence alignment