Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM60_RS09000 Genome accession   NZ_LS483366
Coordinates   1934490..1935008 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain NCTC7366     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1929490..1940008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS08980 (NCTC7366_01820) - 1931409..1932353 (+) 945 WP_045769126.1 magnesium transporter CorA family protein -
  DQM60_RS08985 (NCTC7366_01821) - 1932423..1933094 (+) 672 WP_013991182.1 DUF1129 domain-containing protein -
  DQM60_RS08990 (NCTC7366_01822) - 1933205..1934086 (+) 882 WP_004183473.1 DUF4300 family protein -
  DQM60_RS08995 (NCTC7366_01823) rpsR 1934209..1934448 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  DQM60_RS09000 (NCTC7366_01824) ssb 1934490..1935008 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  DQM60_RS09005 (NCTC7366_01825) rpsF 1935020..1935310 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  DQM60_RS09010 (NCTC7366_01826) - 1935511..1936464 (+) 954 WP_045769125.1 hypothetical protein -
  DQM60_RS09015 (NCTC7366_01827) - 1936587..1937915 (+) 1329 WP_231910683.1 ISL3 family transposase -
  DQM60_RS09020 (NCTC7366_01828) tnpA 1937944..1938417 (-) 474 WP_013990678.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=1138797 DQM60_RS09000 WP_002891844.1 1934490..1935008(-) (ssb) [Streptococcus salivarius strain NCTC7366]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1138797 DQM60_RS09000 WP_002891844.1 1934490..1935008(-) (ssb) [Streptococcus salivarius strain NCTC7366]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment