Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM60_RS05475 Genome accession   NZ_LS483366
Coordinates   1219691..1220503 (-) Length   270 a.a.
NCBI ID   WP_045772120.1    Uniprot ID   A0AB37CL80
Organism   Streptococcus salivarius strain NCTC7366     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1214691..1225503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS05445 (NCTC7366_01098) - 1214909..1215775 (-) 867 WP_004182606.1 GNAT family N-acetyltransferase -
  DQM60_RS05450 (NCTC7366_01099) yidA 1215954..1216760 (+) 807 WP_004182607.1 sugar-phosphatase -
  DQM60_RS05455 (NCTC7366_01100) - 1216760..1217974 (+) 1215 WP_111686597.1 aminoacyltransferase -
  DQM60_RS05460 (NCTC7366_01101) tnpA 1218113..1218586 (-) 474 WP_013990678.1 IS200/IS605 family transposase -
  DQM60_RS05465 - 1218824..1219101 (-) 278 Protein_1021 ISL3 family transposase -
  DQM60_RS05470 (NCTC7366_01102) - 1219273..1219632 (-) 360 WP_111686598.1 YbaN family protein -
  DQM60_RS05475 (NCTC7366_01103) vicX 1219691..1220503 (-) 813 WP_045772120.1 MBL fold metallo-hydrolase Regulator
  DQM60_RS05480 (NCTC7366_01104) vicK 1220509..1221849 (-) 1341 WP_013990681.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM60_RS05485 (NCTC7366_01105) vicR 1221842..1222549 (-) 708 WP_002884978.1 response regulator YycF Regulator
  DQM60_RS05490 (NCTC7366_01106) - 1222835..1223602 (+) 768 WP_111686599.1 amino acid ABC transporter ATP-binding protein -
  DQM60_RS05495 (NCTC7366_01107) - 1223612..1224445 (+) 834 WP_014633206.1 transporter substrate-binding domain-containing protein -
  DQM60_RS05500 (NCTC7366_01108) - 1224463..1225161 (+) 699 WP_014633207.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30136.98 Da        Isoelectric Point: 5.3499

>NTDB_id=1138780 DQM60_RS05475 WP_045772120.1 1219691..1220503(-) (vicX) [Streptococcus salivarius strain NCTC7366]
MTSDLGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANERTWQIMDSKNMLGKIDNSQKHVFSRDKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GIIENADGYLIESNHDVEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTME
NQLARADFGVGTDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1138780 DQM60_RS05475 WP_045772120.1 1219691..1220503(-) (vicX) [Streptococcus salivarius strain NCTC7366]
ATGACCTCAGATTTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACTGGTAATTCCTTTTACTTGGAAACTCCAGA
GAAGAAGATTCTTGTAGATGCTGGTTTGTCTGGTAAGAAAATCACAAGTTTGCTAGCTGAGATTGATCGTGATCCGAGTG
ATTTGGATGCAATCTTAGTAACGCATGAACACAAGGATCACATCCATGGTGTAGGCGTTTTAGCTCGTAAATATGGCATG
GATATATACGCCAACGAGAGAACCTGGCAGATTATGGATAGTAAAAATATGCTTGGCAAGATTGATAATAGCCAGAAACA
TGTTTTTTCTCGTGATAAGCTTCTGACCTTTGGAGACATTGATATTGAGTCTTTTGGAGTTAGTCACGATGCTATTGATC
CACAGTTCTATCGCTTTATGAAAGATGGAAAGAGTTTCGTCATGTTGACGGATACGGGTTATGTTTCTGATCGTATGGCA
GGTATTATTGAAAATGCCGATGGCTATCTGATTGAGTCCAATCATGATGTTGAAATCCTTAGAGCAGGTTCATATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAAGGTCACTTGTGTAATGAAGATGGAGCGGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATCTACTTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAGTTGGCCCACATGACGATGGAA
AATCAGTTGGCACGTGCTGACTTTGGTGTTGGAACTGACTTTAAAGTTTATGATACCTCACCGGACACAGCGACTCCACT
GACAGACATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.239

99.259

0.767

Multiple sequence alignment